hugohrban / ProGen2-finetuningView external linksLinks
Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
☆86Feb 3, 2025Updated last year
Alternatives and similar repositories for ProGen2-finetuning
Users that are interested in ProGen2-finetuning are comparing it to the libraries listed below
Sorting:
- ☆13Sep 29, 2023Updated 2 years ago
- ☆11Aug 26, 2024Updated last year
- The first large protein language model trained follows structure instructions.☆94May 20, 2025Updated 8 months ago
- ☆27Feb 10, 2024Updated 2 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆72Jul 2, 2025Updated 7 months ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆11Dec 10, 2024Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated last week
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆330Jun 11, 2025Updated 8 months ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Aligning protein generative models with experimental fitness☆117Oct 16, 2025Updated 3 months ago
- DyNoPy☆11Sep 5, 2024Updated last year
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- ☆14Jul 14, 2023Updated 2 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated last year
- ☆15Mar 28, 2025Updated 10 months ago
- PyPEF – Pythonic Protein Engineering Framework☆14Updated this week
- Official release of the ProGen models☆692Aug 4, 2023Updated 2 years ago
- Official release of the ProGen models☆55Jan 29, 2025Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Dec 1, 2025Updated 2 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆663Jan 15, 2026Updated 3 weeks ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated this week
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- ☆12Dec 2, 2024Updated last year
- ☆103Updated this week
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- ☆212Sep 24, 2024Updated last year
- Public Release of ProGen3 family of Models☆100Jul 21, 2025Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆50Apr 29, 2025Updated 9 months ago
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆17Nov 19, 2024Updated last year
- ☆61Apr 9, 2024Updated last year
- ☆30Dec 12, 2024Updated last year
- ML-guided enzyme engineering☆75Jan 24, 2026Updated 3 weeks ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Oct 24, 2025Updated 3 months ago
- Official repository for the ProteinGym benchmarks☆386Jan 12, 2026Updated last month
- PLM based active learning model for protein engineering☆85Aug 6, 2024Updated last year
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 9 months ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 2 months ago
- ☆22Dec 15, 2024Updated last year
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆191Dec 4, 2025Updated 2 months ago