Alternatives and similar repositories for ProGen2-finetuning

Users that are interested in ProGen2-finetuning are comparing it to the libraries listed below

• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆64Updated 3 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆40Updated 9 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆73Updated 5 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆101Updated 3 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆56Updated 4 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆77Updated 3 weeks ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆75Updated last year
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆56Updated 6 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆99Updated last month
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆62Updated last year
• zhanghaicang / carbonmatrix_public
  ☆115Updated 2 weeks ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆81Updated 10 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆113Updated 3 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆38Updated 6 months ago
• levinthal / Pallatom
  ☆95Updated 3 weeks ago
• varun-shanker / structural-evolution
  ☆109Updated 11 months ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆29Updated 10 months ago
• yehlincho / BoltzDesign1
  ☆152Updated 2 weeks ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆36Updated 6 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆62Updated 4 months ago
• Kuhlman-Lab / evopro
  ☆81Updated last week
• robpearc / DeepFoldRNA
  ☆35Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated 10 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆107Updated 3 months ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated last month