google-deepmind / nuclease_designLinks
ML-guided enzyme engineering
☆72Updated 3 months ago
Alternatives and similar repositories for nuclease_design
Users that are interested in nuclease_design are comparing it to the libraries listed below
Sorting:
- Consolidated repository to perform RLXF☆36Updated this week
- ☆134Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 2 weeks ago
- ☆100Updated this week
- Structure prediction of alternative protein conformations☆80Updated 10 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆146Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated 7 months ago
- Protein Engineering via Exploration of an Energy Landscape☆98Updated last week
- ☆114Updated 3 years ago
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆70Updated 2 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Updated 5 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 2 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Updated 2 months ago
- ☆72Updated 10 months ago
- Official repository of EnzymeFlow☆97Updated last year
- Directed evolution of proteins in sequence space with gradients☆93Updated 3 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- ☆73Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆100Updated 8 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆52Updated 5 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆81Updated 7 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 2 months ago
- Adapting protein language models for structure-conditioned design☆40Updated last year
- Improved antibody structure-based design using inverse folding☆151Updated last month