Alternatives and similar repositories for progen

Users that are interested in progen are comparing it to the libraries listed below

• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆560Updated last year
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆659Updated 6 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆848Updated last month
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆602Updated 2 years ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆391Updated 2 years ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆773Updated 6 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆369Updated last year
• nadavbra / protein_bert
  ☆563Updated 8 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆366Updated 4 months ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆403Updated last year
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆929Updated 3 months ago
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,117Updated 2 weeks ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,531Updated last year
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆787Updated 5 months ago
• microsoft / protein-sequence-models
  ☆253Updated last year
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆505Updated 2 years ago
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,276Updated 6 months ago
• google-deepmind / alphamissense
  ☆596Updated last year
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆547Updated 3 weeks ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆602Updated 3 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆269Updated last year
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆633Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆323Updated last year
• generatebio / chroma
  A generative model for programmable protein design
  ☆783Updated last year
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 4 months ago
• pinellolab / DNA-Diffusion
  🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
  ☆422Updated 2 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆274Updated 2 years ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆350Updated 2 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆358Updated 3 years ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆455Updated last year