Alternatives and similar repositories for GVP-MSA

Users that are interested in GVP-MSA are comparing it to the libraries listed below

• PKUliujl / GeoSeqBuilder
  ☆27Updated 4 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated 2 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆35Updated 8 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 7 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆67Updated 2 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆23Updated 5 years ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 10 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆12Updated 2 months ago
• debbiemarkslab / nanobody-polyreactivity
  Polyreactivity Website
  ☆13Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆48Updated 2 weeks ago
• Furman-Lab / PatchMAN
  ☆26Updated last month
• HongzhouTang / BayeStab
  this is the BateStab program
  ☆4Updated 2 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆26Updated 3 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 5 months ago
• HannesStark / CodonMPNN
  ☆27Updated 5 months ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated 2 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆18Updated 3 months ago
• skalyaanamoorthy / PSLMs
  ☆18Updated 7 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆25Updated 10 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆41Updated last month
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆34Updated 10 months ago