idmjky / EvolvePro
PLM based active learning model for protein engineering
☆77Updated 8 months ago
Alternatives and similar repositories for EvolvePro:
Users that are interested in EvolvePro are comparing it to the libraries listed below
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆57Updated 10 months ago
- Learning the language of protein-protein interactions☆62Updated 2 weeks ago
- ☆65Updated 3 weeks ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆46Updated 4 months ago
- Improved antibody structure-based design using inverse folding☆108Updated 3 weeks ago
- Making Protein Modeling Accessible to All Biologists☆106Updated last week
- ☆77Updated last month
- ☆49Updated 2 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆71Updated 11 months ago
- Aligning protein generative models with experimental fitness☆89Updated 5 months ago
- Efficient implementatin of ESM family.☆54Updated 2 months ago
- ☆101Updated 9 months ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆56Updated 2 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆133Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆111Updated 3 weeks ago
- Code for ColabDock paper☆137Updated 5 months ago
- ☆37Updated 3 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆53Updated 3 weeks ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆111Updated last year
- Protein language model trained on coding DNA☆46Updated 5 months ago
- ☆62Updated 3 years ago
- Fitness landscapes for antibodies☆68Updated 3 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆51Updated 8 months ago
- Protein folding in Pymol☆108Updated 2 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆54Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated last month
- ☆67Updated 6 months ago