Alternatives and similar repositories for Espalier

Users that are interested in Espalier are comparing it to the libraries listed below

• b-brankovics / grabb
  GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…
  ☆13Updated 5 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆21Updated 5 years ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• ballesterus / Utensils
  Simple scripts for concatenate alignments and rename terminals for phylogenetics
  ☆22Updated 3 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 2 months ago
• CAFS-bioinformatics / P_RNA_scaffolder
  use paired-end transcriptome reads to scaffold genomes
  ☆11Updated 6 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• duchene / phylomad
  ☆19Updated last year
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 5 years ago
• metageni / Scaffold_builder
  Combining de novo and reference-guided assembly with Scaffold_builder
  ☆20Updated 4 years ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆57Updated 10 years ago
• balabanmetin / uDance
  ☆42Updated last year
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆35Updated last month
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆27Updated 6 years ago
• caraweisman / abSENSE
  Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…
  ☆18Updated last year
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆14Updated 9 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• TBooker / PicMin
  ☆11Updated 2 years ago
• UtaDaphniaLab / Gene_Annotation_Easy_Viewer
  Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.
  ☆11Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆37Updated last month
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 11 months ago
• blackrim / phyutility
  ☆22Updated 11 years ago
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated last year
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago