Alternatives and similar repositories for Pandoras-Toolbox-for-Bioinformatics

Users that are interested in Pandoras-Toolbox-for-Bioinformatics are comparing it to the libraries listed below

• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 3 weeks ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆58Updated 7 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆55Updated 4 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 9 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• SamStudio8 / chitin
  chitin: an awful shell for awful bioinformaticians
  ☆61Updated 5 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 8 years ago
• arq5x / ggd
  ☆43Updated 9 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆30Updated 4 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• walaj / bxtools
  Tools for analyzing 10X Genomics data
  ☆42Updated 6 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 3 weeks ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• melbournebioinformatics / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…
  ☆34Updated 11 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• brentp / gsort
  sort genomic data
  ☆36Updated last month
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated 7 months ago