hbc / NGS-Data-Analysis-long-course
☆11Updated 7 years ago
Alternatives and similar repositories for NGS-Data-Analysis-long-course:
Users that are interested in NGS-Data-Analysis-long-course are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Recommendations to contenarized your bioinformatics software☆11Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- ☆12Updated last year
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- ☆19Updated 7 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆17Updated 10 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Updated 9 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Updated 9 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- Shape analysis of high-throughput data☆19Updated 9 years ago