Alternatives and similar repositories for NGS-Data-Analysis-long-course:

Users that are interested in NGS-Data-Analysis-long-course are comparing it to the libraries listed below

• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• ypriverol / containers-rules-manuscript
  Recommendations to contenarized your bioinformatics software
  ☆11Updated 6 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 10 months ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 5 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 8 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• PanosFirmpas / bamToBigWig
  Directly create a bigwig file with signal derived from a sorted and indexed bam file.
  ☆11Updated 7 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• epigen / cll-chromatin
  Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)
  ☆9Updated 7 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated last year
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 4 years ago
• lmweber / Rtsne-example
  Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
  ☆17Updated 9 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 2 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• NCBI-Hackathons / Network_SNPs
  A framework for network analysis and display of SNPs
  ☆19Updated 8 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 11 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆33Updated 4 months ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆30Updated 7 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• rthurman / hotspot
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
  ☆14Updated 11 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 8 months ago
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆12Updated 6 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago