hbc / NGS-Data-Analysis-long-courseLinks
☆11Updated 7 years ago
Alternatives and similar repositories for NGS-Data-Analysis-long-course
Users that are interested in NGS-Data-Analysis-long-course are comparing it to the libraries listed below
Sorting:
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Genetics training camp☆21Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- ☆12Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Recommendations to contenarized your bioinformatics software☆11Updated 7 years ago
- ☆12Updated 6 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- A framework for network analysis and display of SNPs☆19Updated 8 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- ☆19Updated 7 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- This BLENDER has been sunsetted☆16Updated 8 months ago
- What's The Function of these genes?☆22Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Core functionality of the CGAT code☆33Updated 4 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago