hbc / NGS-Data-Analysis-long-course
☆11Updated 7 years ago
Related projects: ⓘ
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆24Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 8 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- Recommendations to contenarized your bioinformatics software☆11Updated 6 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆13Updated 2 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 6 years ago
- BitSeq code☆16Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 5 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆12Updated 5 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- A framework for network analysis and display of SNPs☆17Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- Universal RObust Peak Annotator☆15Updated 9 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- We have moved to https://github.com/limix/limix.☆23Updated 7 years ago
- ☆10Updated 7 months ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆9Updated 7 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 6 years ago
- ☆19Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago