BioContainers / specsLinks
BioContainers specifications
☆52Updated 2 years ago
Alternatives and similar repositories for specs
Users that are interested in specs are comparing it to the libraries listed below
Sorting:
- Ensembl tools☆34Updated 3 months ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- Galaxy Admin Training☆60Updated 2 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- cache packages permanently☆15Updated 3 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆95Updated this week
- ☆38Updated 2 months ago
- ☆82Updated 3 years ago
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- IPAW: a Nextflow workflow for proteogenomics☆29Updated last year
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 7 months ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆86Updated last month
- Analysis from kallisto paper☆32Updated 9 years ago
- CWL for GDC DNASeq workflows☆23Updated last week
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆80Updated 10 months ago