A simple RNA-Seq differential gene expression pipeline using Nextflow
☆102Aug 6, 2025Updated last year
Alternatives and similar repositories for rnaflow
Users that are interested in rnaflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 9 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ☆17Jun 15, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated 2 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆62Sep 10, 2026Updated last week
- RNA-seq, QC and differential analysis pipeline☆17Aug 27, 2026Updated 3 weeks ago
- A proof of concept daisy-chaining Nextflow workflows☆35Updated this week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆66Jan 22, 2026Updated 7 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Aug 26, 2026Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆588Sep 7, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated last month
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated last year
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,370Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆45May 2, 2026Updated 4 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆405May 16, 2026Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆407Sep 11, 2026Updated last week
- ☆16Aug 10, 2026Updated last month
- List of companies☆13Dec 24, 2024Updated last year
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Alignment-based gene expression quantification☆40Aug 4, 2026Updated last month
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- zDB: comparative bacterial genomics made easy☆43Sep 3, 2026Updated 2 weeks ago
- ☆21Jul 12, 2026Updated 2 months ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆23Jun 18, 2021Updated 5 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage a…☆17Sep 2, 2026Updated 2 weeks ago