likelet / IDEALinks
Interactive Differential Expression Analyzer
☆37Updated 5 years ago
Alternatives and similar repositories for IDEA
Users that are interested in IDEA are comparing it to the libraries listed below
Sorting:
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆38Updated 4 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆26Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Updated 10 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- 361 Division - Scientific Training, Education and Learning☆28Updated 5 years ago
- ☆78Updated 11 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Convert BAM files to bigWig files with a simple command☆20Updated 7 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- BIC@MSKCC Variants Pipeline☆24Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 8 months ago
- Utility functions for FACETS☆39Updated last month
- Tumor Mutational Burden☆63Updated 4 months ago
- A shiny app for TBtools data plot☆29Updated 9 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago