Alternatives and similar repositories for bulkAnalyseR

Users that are interested in bulkAnalyseR are comparing it to the libraries listed below

• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 4 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated last year
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 7 months ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆17Updated 3 weeks ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 3 weeks ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆37Updated last year
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆58Updated last year
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• remap-cisreg / ReMapEnrich
  ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…
  ☆16Updated 4 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆21Updated 4 months ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆23Updated 2 years ago
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆26Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• TranslationalBioinformaticsUnit / GeneSetCluster
  a tool for summarizing and integrating gene-set analysis results
  ☆16Updated last year
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆29Updated this week
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated last year
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 7 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆21Updated 6 years ago
• CompEpigen / ezASCAT
  Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
  ☆12Updated 4 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆37Updated 7 years ago
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆30Updated last month
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago