Alternatives and similar repositories for bulkAnalyseR

Users that are interested in bulkAnalyseR are comparing it to the libraries listed below

• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆21Updated last month
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated 3 weeks ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 5 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 7 months ago
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated 10 months ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆22Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• remap-cisreg / ReMapEnrich
  ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…
  ☆15Updated 3 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆16Updated 3 months ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 3 months ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 6 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated last month
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 10 months ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 5 months ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆29Updated 2 months ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆29Updated 4 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 8 months ago
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated last month
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 months ago