Alternatives and similar repositories for Network_Enhancement:

Users that are interested in Network_Enhancement are comparing it to the libraries listed below

• idekerlab / Network_Evaluation_Tools
  Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
  ☆32Updated last year
• mims-harvard / ohmnet
  OhmNet: Representation learning in multi-layer graphs
  ☆82Updated 4 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆76Updated 4 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆61Updated 3 years ago
• ushaham / BatchEffectRemoval
  ☆55Updated 4 years ago
• krishnanlab / GenePlexus
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Updated 3 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆31Updated 3 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆33Updated 7 months ago
• BatzoglouLabSU / SIMLR
  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…
  ☆110Updated 3 months ago
• ma-compbio / MATCHA
  multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
  ☆29Updated 2 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 5 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 3 months ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆16Updated 3 years ago
• luslab / arshamg-scrnaseq-wgan
  Wasserstein Generative Adversarial Network for analysing scRNAseq data
  ☆34Updated 4 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆53Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• HarveyYan / RNATracker
  Prediction of mRNA subcellular localization using deep recurrent neural networks
  ☆13Updated 5 years ago
• mims-harvard / crank
  Prioritizing network communities
  ☆29Updated 4 years ago
• kckishan / GNE
  This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…
  ☆31Updated 4 years ago
• RabadanLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆7Updated 7 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆38Updated 3 months ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆41Updated 2 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 4 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆24Updated 6 years ago
• zpliulab / GENELink
  ☆26Updated 2 years ago
• smaslova / AI-TAC
  ☆26Updated last year
• bowang87 / SIMLR_PY
  Python Implementation of SIMLR for single-cell visualization and analysis
  ☆23Updated 2 years ago
• SydneyBioX / SimBench
  ☆15Updated 10 months ago