Alternatives and similar repositories for Network_Enhancement

Users that are interested in Network_Enhancement are comparing it to the libraries listed below

• idekerlab / Network_Evaluation_Tools
  Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
  ☆32Updated 2 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆77Updated 4 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆22Updated 7 years ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• kckishan / GNE
  This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…
  ☆31Updated 4 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• rvinas / HYFA
  Hypergraph Factorisation
  ☆23Updated 6 months ago
• ma-compbio / MATCHA
  multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
  ☆29Updated 2 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• mims-harvard / ohmnet
  OhmNet: Representation learning in multi-layer graphs
  ☆83Updated 4 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆34Updated 11 months ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 7 months ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 5 years ago
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆17Updated 4 years ago
• krishnanlab / GenePlexus
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Updated 3 years ago
• biomed-AI / GraphSCI
  Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks
  ☆19Updated 11 months ago
• trungnt13 / sisua
  SemI-SUpervised generative Autoencoder models for single cell data
  ☆18Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• ushaham / BatchEffectRemoval
  ☆55Updated 5 years ago
• mstrazar / iONMF
  Integrative orthogonal non-negative matrix factorization
  ☆31Updated 5 years ago
• BatzoglouLabSU / SIMLR
  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…
  ☆111Updated last month
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• bowang87 / SIMLR_PY
  Python Implementation of SIMLR for single-cell visualization and analysis
  ☆23Updated 2 years ago
• QData / DeepDiffChrome
  "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,
  ☆20Updated 5 years ago
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆100Updated 10 months ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆94Updated 5 years ago
• haichengyi / MAN
  Codes and data for the paper entitled "Learning representations to predict intermolecular interactions on large-scale heterogeneous molec…
  ☆1Updated 11 months ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago