Alternatives and similar repositories for BIODICA

Users that are interested in BIODICA are comparing it to the libraries listed below

• brian-cleary / CS-SMAF
  ☆18Updated 8 years ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• RGLab / openCyto
  A package that provides data analysis pipeline for flow cytometry.
  ☆79Updated 4 months ago
• raphael-group / hotnet2
  HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
  ☆102Updated 6 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆81Updated 4 years ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆62Updated 5 years ago
• caravagnalab / revolver
  Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data
  ☆66Updated 3 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆33Updated 4 months ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated last week
• catavallejos / BASiCS
  BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…
  ☆85Updated 4 months ago
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆71Updated 3 months ago
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆123Updated last week
• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆142Updated 2 months ago
• YosefLab / scone
  ☆55Updated 11 months ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆78Updated 2 years ago
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆117Updated 2 weeks ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆24Updated 5 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆41Updated 3 years ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆59Updated 5 years ago
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 7 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆44Updated 5 years ago
• lmweber / cytometry-clustering-comparison
  R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
  ☆45Updated 8 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 11 months ago
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 5 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• shwhalen / targetfinder
  ☆84Updated 4 years ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆87Updated last week
• JEFworks-Lab / HoneyBADGER
  HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
  ☆99Updated 4 years ago