rusalkaguy / snakemake-slurm-tutorial
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
☆10Updated 6 years ago
Alternatives and similar repositories for snakemake-slurm-tutorial:
Users that are interested in snakemake-slurm-tutorial are comparing it to the libraries listed below
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆31Updated 7 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 4 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 6 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- gkmSVM R package☆17Updated 7 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Updated 4 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆19Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- Genomic plot in trellis layout☆39Updated last year
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 5 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 7 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 7 years ago