MNase-seq analysis pipeline using BWA and DANPOS2.
☆13Feb 23, 2026Updated last month
Alternatives and similar repositories for mnaseseq
Users that are interested in mnaseseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Mar 31, 2026Updated last week
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Mar 16, 2026Updated 3 weeks ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13Jul 28, 2025Updated 8 months ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated last month
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆235Updated this week
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago
- Client-side REST access to KEGG☆14Nov 17, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ATAC-seq peak-calling and QC analysis pipeline☆220Mar 30, 2026Updated last week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆25Jun 3, 2025Updated 10 months ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 10 months ago
- Rapid & standardized genome annotation using protein structural information☆51Updated this week
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated this week
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- ☆11Apr 11, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- DeepLocPro repository.☆17Feb 19, 2026Updated last month
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- ☆10Sep 11, 2025Updated 7 months ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Running Dash apps inside ShinyProxy☆17Jul 15, 2024Updated last year
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆12Sep 30, 2021Updated 4 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆27Aug 23, 2022Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- ☆11Oct 21, 2022Updated 3 years ago
- a modified version of FunSeq2 using new data context☆15Aug 18, 2022Updated 3 years ago
- Ultimate NLP Toolkit for GPUs: RAPIDS-AI, PyTorch, NeMo, Tensorboard, TensorRT, CUDA 10.1☆10Mar 19, 2020Updated 6 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 8 months ago
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 10 months ago