nf-core / mnaseseq
MNase-seq analysis pipeline using BWA and DANPOS2.
☆10Updated 4 months ago
Related projects: ⓘ
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆27Updated 2 weeks ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆41Updated last month
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆18Updated 4 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆25Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆52Updated last month
- k-mer similarity analysis pipeline☆19Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- ☆51Updated 5 years ago
- Somatic structural variant caller for long-read data☆43Updated 3 weeks ago
- Mapped QC analysis program☆41Updated 6 years ago
- A battery of methylation tools for PacBio HiFi reads☆26Updated 3 weeks ago
- Toolkit for genome-wide analysis of tandem repeats☆48Updated this week
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆34Updated last year
- WDL workflows for variant calling and assembly using ONT☆28Updated 2 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆35Updated 5 months ago
- Digenome-toolkit ver2.☆15Updated 2 years ago
- Long-read splice alignment with high accuracy☆59Updated last week
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆32Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆61Updated last month
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated 3 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 5 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- ☆12Updated 2 months ago
- Pore-C support☆52Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆53Updated last year
- IDR☆30Updated last year
- FusionInspector code☆56Updated 3 weeks ago
- ☆36Updated this week
- A VSCode extension pack for nf-core developers.☆14Updated 5 months ago