kdm9 / SRApyLinks
SRA python tools
☆11Updated 4 years ago
Alternatives and similar repositories for SRApy
Users that are interested in SRApy are comparing it to the libraries listed below
Sorting:
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Annotating principal splice isoforms☆16Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- ☆25Updated 5 years ago
- NGSTools☆16Updated 8 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- Align sequences and then parse features.☆17Updated this week
- ☆20Updated 5 months ago
- A python package for showing JBrowse views☆26Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- ☆13Updated 8 years ago
- ☆18Updated 5 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 months ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago