Alternatives and similar repositories for DGE_workshop_salmon:

Users that are interested in DGE_workshop_salmon are comparing it to the libraries listed below

• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆59Updated 11 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆109Updated 8 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated 2 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆164Updated 4 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 6 months ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 2 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆114Updated 7 months ago
• BCCHR-trainee-omics-group / StudyGroup
  This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.
  ☆42Updated 10 months ago
• hamidghaedi / Methylation_Analysis
  Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
  ☆26Updated 11 months ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆50Updated 5 years ago
• hbctraining / main
  ☆53Updated last week
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 11 months ago
• bioinformatics-core-shared-training / cruk-summer-school-2019
  Summer School 2019 - Functional Genomics
  ☆20Updated 5 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆101Updated 2 years ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆87Updated 5 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆49Updated 2 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆77Updated last year
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆92Updated 2 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆84Updated 5 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆101Updated 2 weeks ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆82Updated last month
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆67Updated last year
• mgonzalezporta / TeachingMaterial
  RNA-seq data analysis practical
  ☆61Updated 10 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated 2 years ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆109Updated 2 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆158Updated 5 months ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆154Updated 8 months ago