☆614Mar 23, 2021Updated 5 years ago
Alternatives and similar repositories for scRNA-seq
Users that are interested in scRNA-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single RNA-seq data analysis with R (Finland, May, 2019)☆231Aug 1, 2022Updated 3 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,578Dec 11, 2022Updated 3 years ago
- ☆661Jul 14, 2026Updated last week
- R toolkit for single cell genomics☆2,770Jul 14, 2026Updated last week
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,808Jul 14, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analysis of single cell RNA-seq data course☆682Apr 11, 2022Updated 4 years ago
- A list of scRNA-seq analysis tools☆808Jul 14, 2026Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- scRNAseq analysis notes from Ming Tang☆821Dec 2, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Papers with code for single cell related papers☆315Mar 23, 2026Updated 3 months ago
- ☆97Mar 23, 2021Updated 5 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆326Aug 19, 2019Updated 6 years ago
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- Community-provided extensions to Seurat☆367Jun 29, 2026Updated 3 weeks ago
- Clone of the Bioconductor repository for the SingleR package.☆204Jul 7, 2026Updated 2 weeks ago
- ☆447Jun 15, 2020Updated 6 years ago
- Inferring CNV from Single-Cell RNA-Seq☆677Nov 14, 2025Updated 8 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆243May 8, 2023Updated 3 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆155Jan 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆490Apr 5, 2024Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆423Jul 2, 2026Updated 2 weeks ago
- ☆114Sep 16, 2020Updated 5 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 6 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for semi-automatic cell type classification☆496May 22, 2026Updated last month
- https://www.sc-best-practices.org☆1,226Updated this week
- A universal enrichment tool for interpreting omics data☆1,217Jul 9, 2026Updated last week
- ☆880Oct 18, 2022Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆181Dec 8, 2022Updated 3 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆457Apr 11, 2026Updated 3 months ago