thelovelab / DESeq2
Differential expression of RNA-seq data using the Negative Binomial
☆371Updated last week
Alternatives and similar repositories for DESeq2:
Users that are interested in DESeq2 are comparing it to the libraries listed below
- ☆383Updated 3 years ago
- ☆188Updated last week
- RNA-seq workflow using STAR and DESeq2☆335Updated 6 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆448Updated 2 months ago
- Differential analysis of RNA-Seq☆304Updated 7 months ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last week
- Intro to ChIPseq using HPC☆294Updated 2 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆459Updated 3 months ago
- A repository for setting up a RNAseq workflow☆425Updated 7 years ago
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- Fast Gene Set Enrichment Analysis☆387Updated last month
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆426Updated 11 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- Bioinformatics one liners from Ming Tang☆462Updated 4 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆392Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆593Updated 2 weeks ago
- ☆304Updated 4 months ago
- parallel fastq-dump wrapper☆287Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆487Updated 2 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆405Updated last month
- Materials for short, half-day workshops☆321Updated this week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆306Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆313Updated this week
- ENCODE ATAC-seq pipeline☆401Updated 6 months ago
- A grammar of graphics for comparative genomics☆645Updated 2 weeks ago
- Publication-ready volcano plots with enhanced colouring and labeling☆422Updated 8 months ago
- A tool to find sequencing data and metadata from public databases.☆564Updated 6 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆166Updated 3 years ago
- Near-optimal RNA-Seq quantification☆673Updated 2 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆263Updated 4 months ago