Alternatives and similar repositories for SARTools

Users that are interested in SARTools are comparing it to the libraries listed below

• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 2 months ago
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆158Updated 3 years ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆48Updated 12 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆163Updated last year
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆94Updated 8 years ago
• quinlan-lab / sllobs-biostats
  ☆73Updated 3 years ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆81Updated 2 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆143Updated 3 months ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 8 months ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• RamRS / biostar-mod-templates
  Moderator Templates for https://www.biostars.org/
  ☆11Updated 4 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆148Updated 4 months ago
• UMCUGenetics / MutationalPatterns
  R package for extracting and visualizing mutational patterns in base substitution catalogues
  ☆108Updated 3 years ago
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆134Updated last year
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 2 years ago
• TickingClock1992 / RIdeogram
  ☆190Updated 5 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 7 years ago
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆61Updated 5 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆88Updated 11 months ago
• raynamharris / Shell_Intro_for_Bioinformatics_STG
  Intro to Shell for Bioinformatics - with STG examples
  ☆28Updated 9 years ago
• hbc / bcbioRNASeq
  R package for bcbio RNA-seq analysis.
  ☆63Updated last year
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆171Updated 2 months ago
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago
• CandiceChuDVM / RNA-Seq
  New user
  ☆42Updated 5 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆199Updated last year
• bioinformatics-ca / bioinformatics-ca.github.io
  Student website repo for 2015/2016 Canadian Bioinformatics Workshops
  ☆34Updated 2 years ago
• hbctraining / main
  ☆56Updated last week