Alternatives and similar repositories for main

Users that are interested in main are comparing it to the libraries listed below

• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆88Updated 5 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated 2 years ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆93Updated 8 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated 2 months ago
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆82Updated 7 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆58Updated 8 months ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆132Updated last week
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆99Updated 10 months ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated last month
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆106Updated 4 years ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆60Updated 5 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 3 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 6 months ago
• ParkerLab / ataqv
  A toolkit for QC and visualization of ATAC-seq results.
  ☆71Updated 8 months ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• nickhir / GermlineMutationCalling
  An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…
  ☆11Updated 3 years ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆79Updated 3 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 3 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆117Updated last year
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 9 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆117Updated 7 months ago
• iscb-dc-rsg / 2016-summer-workshop
  ISCB DC Area Regional Student Group - Summer 2016 Workshop
  ☆48Updated 9 years ago