hbctraining / Intro-to-rnaseq-hpc-O2Links
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
☆174Updated 4 years ago
Alternatives and similar repositories for Intro-to-rnaseq-hpc-O2
Users that are interested in Intro-to-rnaseq-hpc-O2 are comparing it to the libraries listed below
Sorting:
- ☆211Updated 3 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last month
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Introduction to bulk RNA-seq☆126Updated 7 months ago
- Step-by-step analysis pipeline for RNA-seq data☆156Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆348Updated this week
- Application for making ENCODE Blacklists☆329Updated 4 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆218Updated 2 weeks ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- GTEx & TOPMed data production and analysis pipelines☆390Updated 2 months ago
- Intro to ChIPseq using HPC☆317Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆198Updated 5 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆234Updated last week
- parallel fastq-dump wrapper☆300Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆271Updated last month
- Detecting sites of genomic enrichment☆197Updated 2 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆168Updated 3 weeks ago
- ☆99Updated 2 months ago
- ☆144Updated 6 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆198Updated 5 years ago
- ChIP peak Annotation, Comparison and Visualization☆245Updated last month
- ENCODE ChIP-seq pipeline☆275Updated last year
- R package for DNA methylation analysis☆243Updated 3 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆253Updated 2 months ago
- ☆282Updated last month
- Single cell RNA sequencing analysis course☆228Updated last week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆175Updated this week
- dN/dS methods to quantify selection in cancer and somatic evolution☆229Updated 6 months ago