Differential analysis of RNA-Seq
☆316May 28, 2025Updated last year
Alternatives and similar repositories for sleuth
Users that are interested in sleuth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Near-optimal RNA-Seq quantification☆769Jul 12, 2026Updated last month
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆925Updated this week
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tool for RNA-Seq analysis.☆40Apr 1, 2022Updated 4 years ago
- Statistical Analysis of RNA-Seq Tools☆111Oct 9, 2025Updated 10 months ago
- Tools for working with BUS files☆102May 27, 2025Updated last year
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- Transcript quantification import for modular pipelines☆144Apr 15, 2026Updated 3 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,436May 31, 2023Updated 3 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,484Aug 2, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RNAseq analysis notes from Ming Tang☆1,096Nov 15, 2021Updated 4 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆235Jun 1, 2024Updated 2 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆24Jun 3, 2018Updated 8 years ago
- RNA-seq aligner☆2,230Mar 18, 2025Updated last year
- Interval data structure☆234Mar 18, 2026Updated 4 months ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆149Aug 3, 2026Updated last week
- Quality of RNA-Seq Toolset☆53Apr 9, 2019Updated 7 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆475Updated this week
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 7 years ago
- home of the bear's lair☆10May 19, 2017Updated 9 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆72May 21, 2026Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆135Apr 10, 2026Updated 4 months ago
- Transcript quantification import with automatic metadata detection☆72Jul 20, 2026Updated 3 weeks ago
- Transcript assembly and quantification for RNA-Seq☆527Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Feb 19, 2017Updated 9 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆539Jul 31, 2026Updated last week
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated 3 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆306Nov 6, 2025Updated 9 months ago