Differential analysis of RNA-Seq
β316May 28, 2025Updated last year
Alternatives and similar repositories for sleuth
Users that are interested in sleuth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Near-optimal RNA-Seq quantificationβ767Jul 12, 2026Updated last week
- π π£ π± Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignmentβ918Updated this week
- Prepare Sailfish and Salmon output for downstream analysisβ41Jun 6, 2019Updated 7 years ago
- Examples of kallisto + sleuthβ11May 18, 2017Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachterβ19Feb 20, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool for RNA-Seq analysis.β40Apr 1, 2022Updated 4 years ago
- Statistical Analysis of RNA-Seq Toolsβ111Oct 9, 2025Updated 9 months ago
- Tools for working with BUS filesβ102May 27, 2025Updated last year
- Analysis from kallisto paperβ32Feb 10, 2016Updated 10 years ago
- Transcript quantification import for modular pipelinesβ144Apr 15, 2026Updated 3 months ago
- Fast fusion detection using kallistoβ80Jun 11, 2025Updated last year
- Rapid Mapping-based Isoform Quantification from RNA-Seq Readsβ127Jun 9, 2022Updated 4 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis incluβ¦β1,430May 31, 2023Updated 3 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.β1,479Jun 29, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNAseq analysis notes from Ming Tangβ1,093Nov 15, 2021Updated 4 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae β¦β235Jun 1, 2024Updated 2 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Toolsβ24Jun 3, 2018Updated 8 years ago
- RNA-seq alignerβ2,224Mar 18, 2025Updated last year
- Interval data structureβ234Mar 18, 2026Updated 4 months ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.β148Aug 30, 2021Updated 4 years ago
- Quality of RNA-Seq Toolsetβ53Apr 9, 2019Updated 7 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq dataβ472Updated this week
- find large indels (in the blind spot between GATK/freebayes and SV callers)β39Dec 3, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code to reproduce analyses from the sleuth paperβ16Nov 20, 2018Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)β62Jul 5, 2019Updated 7 years ago
- home of the bear's lairβ10May 19, 2017Updated 9 years ago
- R package for analyzing single-cell RNA-seq dataβ180Feb 29, 2024Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seqβ24Jun 4, 2024Updated 2 years ago
- An interactive web-tool for RNA-seq analysisβ71May 21, 2026Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)β134Apr 10, 2026Updated 3 months ago
- Transcript quantification import with automatic metadata detectionβ72Updated this week
- Transcript assembly and quantification for RNA-Seqβ525Jun 3, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- β12Feb 19, 2017Updated 9 years ago
- Some sleuth walkthroughs to help you get startedβ10Jul 26, 2018Updated 7 years ago
- annotate a VCF with other VCFs/BEDs/tabixed filesβ406Jun 16, 2026Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samplesβ51Apr 9, 2021Updated 5 years ago
- Graph-based alignment (Hierarchical Graph FM index)β540Jan 27, 2026Updated 5 months ago
- Strelka2 germline and somatic small variant callerβ393Apr 20, 2026Updated 3 months ago
- SUPPA: Fast quantification of splicing and differential splicingβ306Nov 6, 2025Updated 8 months ago