Alternatives and similar repositories for Shell-for-bioinformatics:

Users that are interested in Shell-for-bioinformatics are comparing it to the libraries listed below

• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆154Updated 3 months ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆79Updated 3 weeks ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆143Updated 5 months ago
• hbctraining / DGE_workshop_salmon
  ☆71Updated 3 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆79Updated 2 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆48Updated 3 years ago
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆86Updated 2 weeks ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆51Updated last month
• hbctraining / main
  ☆52Updated last week
• tavareshugo / tutorial_DESeq2_contrasts
  ☆58Updated 9 months ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆190Updated last year
• whussain2 / R-for-Plant-Breeding
  R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
  ☆42Updated 10 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆105Updated 6 months ago
• boulderrinnlab / CLASS_2023
  ☆19Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆63Updated 11 months ago
• griffithlab / rnabio.org
  website for the rnaseq course
  ☆95Updated 2 months ago
• raynamharris / Shell_Intro_for_Bioinformatics_STG
  Intro to Shell for Bioinformatics - with STG examples
  ☆28Updated 8 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆74Updated 11 months ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 9 months ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆75Updated last year
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆86Updated 5 years ago
• liulab-dfci / bioinfo-combio
  The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
  ☆89Updated 2 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆65Updated last week
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated last year
• hbctraining / Intro-to-R-with-DGE
  ☆61Updated 3 years ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆140Updated last month
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago