kevinblighe / ClinicalGradeDNAseqLinks
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
☆26Updated 5 years ago
Alternatives and similar repositories for ClinicalGradeDNAseq
Users that are interested in ClinicalGradeDNAseq are comparing it to the libraries listed below
Sorting:
- Mapped QC analysis program☆44Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ☆51Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 9 months ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆25Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- ☆23Updated 7 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Adapters for trimming☆30Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated last week
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago