Annotation of Genetic Variants
☆32Jul 18, 2026Updated this week
Alternatives and similar repositories for VariantAnnotation
Users that are interested in VariantAnnotation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆30Apr 28, 2026Updated 2 months ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 10 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Query the gene models of a given organism/assembly☆27Apr 28, 2026Updated 2 months ago
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13Jul 8, 2026Updated last week
- SCALLOP-INF analysis☆20Jul 7, 2026Updated 2 weeks ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Jun 17, 2026Updated last month
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆41Apr 26, 2024Updated 2 years ago
- phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R☆56Jul 18, 2022Updated 4 years ago
- ☆14Jan 22, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆43Sep 18, 2025Updated 10 months ago
- ☆40Jan 20, 2021Updated 5 years ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆42Oct 31, 2025Updated 8 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆36May 14, 2026Updated 2 months ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated last year
- ☆23Sep 1, 2022Updated 3 years ago
- Repo for Dynamic Statistical Comparisons project☆13Feb 5, 2024Updated 2 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- Foundation of integer range manipulation in Bioconductor☆23Jul 1, 2026Updated 2 weeks ago
- Statistical fine-mapping pipeline in FinnGen☆34Jul 9, 2026Updated last week
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆43Jul 3, 2021Updated 5 years ago
- Genetic association studies☆16Apr 13, 2026Updated 3 months ago
- An R package for creating ggplot2 based miami plots.☆19Mar 7, 2025Updated last year
- Find causal cell-types underlying complex trait genetics☆97Feb 8, 2026Updated 5 months ago
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆17Jun 23, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples☆68Jan 9, 2025Updated last year
- R package for creating simulated summary statistics and testing MR methods☆12Sep 2, 2020Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Jul 14, 2026Updated last week
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Updated this week
- Efficient manipulation of biological strings☆69Updated this week