Annotation of Genetic Variants
☆30Dec 17, 2025Updated 3 months ago
Alternatives and similar repositories for VariantAnnotation
Users that are interested in VariantAnnotation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆28Mar 7, 2026Updated last month
- Anno is a variant annotation tool☆24May 18, 2016Updated 9 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13Mar 30, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Query the gene models of a given organism/assembly☆27Oct 30, 2025Updated 5 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 5 months ago
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated last year
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 2 years ago
- phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R☆56Jul 18, 2022Updated 3 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 6 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆39Apr 26, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆38Jan 20, 2021Updated 5 years ago
- ☆13Jan 22, 2026Updated 2 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆34Mar 26, 2026Updated 2 weeks ago
- R package for bcbio single-cell RNA-seq analysis.☆30Sep 9, 2024Updated last year
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆41Oct 31, 2025Updated 5 months ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- Repo for Dynamic Statistical Comparisons project☆13Feb 5, 2024Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆18Mar 7, 2025Updated last year
- R package that contains plink binaries for windows, mac and linux☆15Oct 14, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Foundation of integer range manipulation in Bioconductor☆23Oct 30, 2025Updated 5 months ago
- Genetic association studies☆16Mar 24, 2026Updated 2 weeks ago
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆42Jul 3, 2021Updated 4 years ago
- Statistical fine-mapping pipeline in FinnGen☆32Oct 3, 2025Updated 6 months ago
- Find causal cell-types underlying complex trait genetics☆94Feb 8, 2026Updated 2 months ago
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Feb 8, 2019Updated 7 years ago
- R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples☆68Jan 9, 2025Updated last year
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Aug 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Mar 13, 2026Updated 3 weeks ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- Creating Debian Packages from CRAN Sources☆12Jul 1, 2020Updated 5 years ago
- An R package for creating Q-Q and manhattan plots from GWAS results☆172Oct 27, 2025Updated 5 months ago
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- ☆21Sep 1, 2024Updated last year