jtleek / svaseqLinks
Analysis for svaseq paper
☆19Updated 10 years ago
Alternatives and similar repositories for svaseq
Users that are interested in svaseq are comparing it to the libraries listed below
Sorting:
- Differential Count Data Analysis Toolbox☆61Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 4 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Functional genomics and genome-wide association studies☆67Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆29Updated 4 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated last month