jtleek / svaseq
Analysis for svaseq paper
☆19Updated 10 years ago
Alternatives and similar repositories for svaseq:
Users that are interested in svaseq are comparing it to the libraries listed below
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆28Updated 8 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- ☆33Updated 2 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- Explore the cancer relevance of your gene list☆50Updated 3 weeks ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Quick access to gene synonyms☆27Updated this week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 weeks ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆32Updated 8 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- R package wrapping bedtools☆38Updated last week