vgteam / vg_wdl
Workflow Description Language (WDL) scripts for common vg workflows
☆20Updated last week
Alternatives and similar repositories for vg_wdl:
Users that are interested in vg_wdl are comparing it to the libraries listed below
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 weeks ago
- ☆35Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆30Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆35Updated 3 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Working space for the GIAB TR benchmarking project☆21Updated 5 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- Structural variant caller☆54Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated last month
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆46Updated 3 weeks ago
- ☆18Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- ☆48Updated 9 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated last month
- SV genotyping with long reads☆40Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 5 months ago
- CAncer Standards Long-read Evaluation☆24Updated last month
- ☆16Updated last month