vgteam / vg_wdl
Workflow Description Language (WDL) scripts for common vg workflows
☆16Updated this week
Related projects: ⓘ
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆23Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆28Updated last year
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- Tumour-only somatic mutation calling using long reads☆22Updated 6 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆31Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- ☆38Updated last week
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 5 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Immuological gene typing and annotation for genome assembly☆30Updated last month
- Structural variant (SV) analysis tools☆36Updated 2 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- ☆27Updated last year
- Structural Variant Prediction Viewer☆30Updated 7 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆18Updated last week
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Structural variant benchmark of challenging medically relevant genes☆16Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆32Updated 2 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated 9 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆52Updated last year
- ☆19Updated 5 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆23Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆19Updated 6 months ago