vgteam / vg_wdlLinks
Workflow Description Language (WDL) scripts for common vg workflows
☆20Updated last month
Alternatives and similar repositories for vg_wdl
Users that are interested in vg_wdl are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- ☆31Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Short Tandem Repeat disease loci resource☆18Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- ☆19Updated 2 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- SV genotyping with long reads☆39Updated last year
- Master of Pores 2☆23Updated 6 months ago
- ☆21Updated 4 months ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- ☆30Updated this week
- Population-wide Deletion Calling☆35Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year