costasilvati / consexpressionLinks
Tool for RNA-Seq analysis.
☆39Updated 3 years ago
Alternatives and similar repositories for consexpression
Users that are interested in consexpression are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆33Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- ☆18Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆33Updated 2 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 5 months ago
- ☆29Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Updated 7 years ago