krishnanlab / obnbLinks
A Python toolkit for setting up benchmarking dataset using biomedical networks
☆22Updated this week
Alternatives and similar repositories for obnb
Users that are interested in obnb are comparing it to the libraries listed below
Sorting:
- Biological Network Integration using Convolutions☆62Updated last year
- Diffusion model for gene regulatory network inference.☆18Updated 2 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- Modeling complex perturbations with CellFlow☆44Updated this week
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- Functional and Learnable Cell dynamicS☆17Updated 2 weeks ago
- ☆32Updated 3 weeks ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- ☆26Updated last week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last month
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Single cell joint embedding and modality prediction with autoencoder☆9Updated 2 years ago
- Functional Embedding of Gene Signatures☆43Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- Hypergraph Factorisation☆23Updated 6 months ago
- ☆16Updated 10 months ago
- Knowledge-primed neural networks☆37Updated 2 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆14Updated 7 months ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆18Updated 3 months ago
- Code and example of the D-SPIN framework☆22Updated this week
- ☆17Updated 3 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆39Updated 7 months ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- ☆14Updated 2 months ago
- ☆46Updated this week
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆28Updated 9 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆36Updated last month