Alternatives and similar repositories for obnb

Users that are interested in obnb are comparing it to the libraries listed below

• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated 2 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆56Updated 2 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆43Updated last year
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆96Updated 11 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆61Updated 3 weeks ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆143Updated last year
• czi-ai / transcriptformer
  ☆100Updated 3 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆53Updated 5 months ago
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆24Updated 5 months ago
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆42Updated this week
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated last year
• valence-labs / TxPert
  A repository for reproducing experiments from the TxPert paper
  ☆25Updated last month
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆35Updated 6 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆26Updated last week
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 4 years ago
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆55Updated 4 years ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 11 months ago
• theislab / geome
  ☆15Updated 2 months ago
• theislab / prophet
  ☆38Updated last month
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆37Updated 2 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆59Updated 3 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 3 years ago
• altoslabs / perturbench
  ☆74Updated last week
• KangBoming / BulkFormer
  BulkFormer: A large-scale foundation model for human bulk transcriptomes
  ☆41Updated last month
• microsoft / zero-shot-scfoundation
  ☆79Updated last month
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆55Updated 5 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year