A Python toolkit for setting up benchmarking dataset using biomedical networks
☆21Apr 27, 2026Updated this week
Alternatives and similar repositories for obnb
Users that are interested in obnb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Apr 22, 2026Updated last week
- ☆15Apr 7, 2026Updated 3 weeks ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 5 months ago
- A chromosomal visualization package for python.☆15Apr 13, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official Implementation of Multi-Masked Aggregators for Graph Neural Networks in Pytorch and PyTorch Geometric☆11Mar 24, 2023Updated 3 years ago
- Courses & workshops led by members of the Krishnan Lab.☆24Sep 7, 2025Updated 7 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated 3 weeks ago
- Official Implementation of Graph Mixer Networks☆20Dec 5, 2023Updated 2 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆162Updated this week
- ☆12Jan 27, 2023Updated 3 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆28May 16, 2021Updated 4 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An interface for Nested Stochastic Block Model for single cell analysis☆37Sep 30, 2025Updated 7 months ago
- Blazing fast toolkit to work with .hic and .cool files☆44Updated this week
- Python code associated with the paper "A Unifying Framework for Spectrum-Preserving Graph Sparsification and Coarsening'' (NeurIPS, 2019)☆16Jun 9, 2020Updated 5 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Apr 14, 2026Updated 2 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 7 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- ☆19Nov 30, 2021Updated 4 years ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 4 months ago
- ☆14Aug 10, 2022Updated 3 years ago
- Started as a Team Project for CS690D at UMass Amherst, now turning into pytorch implementation of hyperbolic neural networks using Poinca…☆12Dec 8, 2022Updated 3 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- A curated list of Biomedical Knowledge Graph related learning materials, databases, tools and other resources☆31Nov 4, 2025Updated 5 months ago
- 推荐☆19Jun 11, 2020Updated 5 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 🌳 A compressed rank/select dictionary exploiting approximate linearity and repetitiveness.☆15Jun 28, 2022Updated 3 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Dec 17, 2023Updated 2 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- DPPIN: A Biological Repository of Dynamic Protein-Protein Interaction Network Data, IEEE BigData 2022☆32Feb 13, 2023Updated 3 years ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆27Dec 7, 2024Updated last year
- A collection of heat engines, based on the OpenAI Gym environment framework for use with reinforcement learning applications.☆15Dec 20, 2021Updated 4 years ago