Alternatives and similar repositories for obnb:

Users that are interested in obnb are comparing it to the libraries listed below

• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 11 months ago
• theislab / geome
  ☆16Updated 8 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated last month
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆30Updated last month
• theislab / prophet
  ☆29Updated 2 weeks ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆53Updated last year
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆38Updated 9 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆17Updated this week
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated this week
• theislab / scTab
  ☆57Updated 5 months ago
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆16Updated 9 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆111Updated last month
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 3 years ago
• kimmo1019 / JAE
  Single cell joint embedding and modality prediction with autoencoder
  ☆9Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆40Updated last year
• rvinas / HYFA
  Hypergraph Factorisation
  ☆23Updated 3 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆58Updated 4 months ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated 11 months ago
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆16Updated 11 months ago
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆21Updated this week
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 4 months ago
• idekerlab / nest_vnn
  NeST-VNN repo
  ☆10Updated 9 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆20Updated last month