fmicompbio / adv_singlecell_2022
Material for the "Advanced topics in single-cell analysis" course (2022 edition)
☆16Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for adv_singlecell_2022
- .h5mu files interface for Seurat☆26Updated 11 months ago
- ☆29Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆41Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated last month
- RNA velocity validation☆23Updated 2 years ago
- scover☆22Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- ☆27Updated 3 months ago
- ☆34Updated 6 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆13Updated 4 years ago
- ☆16Updated 4 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆64Updated 7 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated last year
- An R/Bioconductor package to identify higher-order molecular phenotypes☆13Updated 10 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- ☆37Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago