fmicompbio / adv_singlecell_2022Links
Material for the "Advanced topics in single-cell analysis" course (2022 edition)
☆17Updated 3 years ago
Alternatives and similar repositories for adv_singlecell_2022
Users that are interested in adv_singlecell_2022 are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- ☆44Updated last year
- ☆37Updated 7 months ago
- ☆39Updated 4 years ago
- ☆41Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 3 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 4 months ago
- ☆32Updated 9 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- ☆31Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Using BCR and expression for sequence embedding☆25Updated 2 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- ☆51Updated last year
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- .h5mu files interface for Seurat☆31Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- A python package for chromVAR☆31Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Inference of TCR motifs☆32Updated 4 months ago