fmicompbio / adv_singlecell_2022
Material for the "Advanced topics in single-cell analysis" course (2022 edition)
☆16Updated 2 years ago
Alternatives and similar repositories for adv_singlecell_2022:
Users that are interested in adv_singlecell_2022 are comparing it to the libraries listed below
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- ☆30Updated 2 months ago
- ☆29Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆19Updated 9 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- ☆45Updated 7 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- ☆20Updated last year
- ☆16Updated 8 months ago
- ☆36Updated 5 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 3 weeks ago
- ☆35Updated 2 weeks ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- .h5mu files interface for Seurat☆28Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 years ago
- ☆16Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 9 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 weeks ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year