jafetgado / PyCanalLinks
Conservation analysis of homologous proteins with Python
☆13Updated 4 years ago
Alternatives and similar repositories for PyCanal
Users that are interested in PyCanal are comparing it to the libraries listed below
Sorting:
- Feature map and function annotation of Proteins☆34Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Python framework for doing ancestral sequence reconstruction☆44Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- snakemake pipeline for creating trees from sequence sets☆97Updated this week
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- ☆12Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- DeepECtransformer☆29Updated 2 years ago
- Genomic language model predicts protein co-regulation and function☆86Updated 10 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆36Updated last year
- ☆30Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆65Updated 5 years ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Updated 6 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 5 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated 2 years ago
- ☆86Updated 2 years ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- Protein structure alignment and search algorithm☆79Updated 2 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated last week
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 5 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆178Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago