jafetgado / PyCanalLinks
Conservation analysis of homologous proteins with Python
☆12Updated 4 years ago
Alternatives and similar repositories for PyCanal
Users that are interested in PyCanal are comparing it to the libraries listed below
Sorting:
- Multi-class signal peptide prediction and structure decoding model.☆97Updated 9 months ago
- snakemake pipeline for creating trees from sequence sets☆91Updated 3 weeks ago
- Feature map and function annotation of Proteins☆34Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆52Updated 3 years ago
- ☆12Updated 11 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- DeepECtransformer☆28Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆41Updated 3 months ago
- A domain parser for Alphafold models☆42Updated last year
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆76Updated 3 months ago
- Fast protein domain structure embedding+search tool☆26Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆35Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆60Updated 5 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆48Updated 6 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆160Updated 11 months ago
- Singularity recipe for AlphaFold☆36Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆196Updated last month
- Genomic language model predicts protein co-regulation and function☆84Updated 8 months ago
- Detection of remote homology by comparison of protein language model representations☆56Updated 11 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆19Updated 2 weeks ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆20Updated 3 weeks ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆75Updated 2 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 4 months ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆38Updated 3 months ago
- A pipeline to build similarity maps of protein space☆40Updated last month
- HLA-I ligand predictor☆43Updated last month