idptools / sparrowLinks
Next generation sequence parameter library for proteins
☆38Updated 3 months ago
Alternatives and similar repositories for sparrow
Users that are interested in sparrow are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆23Updated 2 years ago
- Feature map and function annotation of Proteins☆34Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 5 months ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- Detection of remote homology by comparison of protein language model representations☆60Updated last year
- ColabFold protocol☆57Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- ☆46Updated last year
- Scripts to generate and analyze afdb clusters☆11Updated 2 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 3 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- DeepECtransformer☆29Updated 2 years ago
- ☆30Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- Long disorder consensus predictor☆17Updated 3 months ago
- ☆31Updated last year
- Conservation analysis of homologous proteins with Python☆13Updated 4 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 2 weeks ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- ☆23Updated last month
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- ☆17Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆43Updated 5 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆16Updated 11 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago