iskana / PBWT-secView external linksLinks
☆14Feb 7, 2020Updated 6 years ago
Alternatives and similar repositories for PBWT-sec
Users that are interested in PBWT-sec are comparing it to the libraries listed below
Sorting:
- collection of data structures and algorithms☆19Mar 19, 2019Updated 6 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆21Aug 8, 2023Updated 2 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- Code for paper: Localized matrix factorization for recommendation based on matrix block diagonal forms☆10Jan 27, 2015Updated 11 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- ☆30Sep 11, 2023Updated 2 years ago
- Finding all the circuits of a directed graph with self-arcs and multiple-arcs by K.A. Hawick and H.A. James☆19Apr 11, 2013Updated 12 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Compact Tree Representation☆16Mar 16, 2017Updated 8 years ago
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 7 months ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 6 months ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 7 years ago
- Zero-inflated mixture model for single-cell data.☆14Feb 16, 2016Updated 9 years ago
- ☆13Jan 20, 2016Updated 10 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- Seekable sources and efficient incremental sinks☆17Sep 20, 2017Updated 8 years ago
- Convert RDF Turtle to N-Triples or N3P☆14Jan 14, 2019Updated 7 years ago
- Efficient construction of the BWT using string compression☆21Jun 3, 2025Updated 8 months ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- Space efficient (graph) algorithms☆18Sep 10, 2020Updated 5 years ago
- Stable sort algorithms and their stability proofs in Rocq☆25Dec 10, 2025Updated 2 months ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated last year
- ☆45Jul 7, 2016Updated 9 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences☆23Feb 21, 2020Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 8 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago