Alternatives and similar repositories for PBWT-sec

Users that are interested in PBWT-sec are comparing it to the libraries listed below

• MitI-7 / WaveletMatrix
  implementation of dynamic wavelet matrix(tree) and static wavelet matrix
  ☆23Updated 6 years ago
• tudocomp / tudocomp
  TU DOrtmund lossless COMPression framework
  ☆19Updated last year
• iwiwi / parallel-radix-sort
  An implementation of optimized parallel radix sort
  ☆50Updated 6 years ago
• tov / succinct-rs
  Succinct Data Structures for Rust
  ☆58Updated 5 months ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆65Updated 2 years ago
• koeppl / stringsheet
  A cheatsheet for most common Stringology tasks
  ☆14Updated 4 years ago
• pelotoncycle / bsort
  Extremely fast inplace radix sort
  ☆43Updated 5 years ago
• iwiwi / radix-heap
  An implementation of radix heap
  ☆64Updated 10 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 6 years ago
• kg86 / visstr
  String Visualizer
  ☆12Updated 2 years ago
• turpinandrew / shuff
  Static Huffman coding
  ☆10Updated 8 years ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆10Updated 3 years ago
• RUSH-LAB / RAMBO
  ☆20Updated 5 years ago
• xxsds / DYNAMIC
  Dynamic succinct/compressed data structures
  ☆112Updated last year
• jltsiren / relative-fm
  Relative data structures based on the BWT
  ☆12Updated 7 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 12 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆11Updated 8 years ago
• tobc / dartminhash
  DartMinHash: Fast Sketching for Weighted Sets
  ☆12Updated 4 years ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• thm-mni-ii / sea
  Space efficient (graph) algorithms
  ☆18Updated 5 years ago
• davidecenzato / PFP-eBWT
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆14Updated 4 months ago
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆14Updated 7 years ago
• Poyias / mBonsai
  Compact Tree Representation
  ☆16Updated 8 years ago
• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 3 years ago
• ekg / succinct-graph
  compressed, queryable variation graphs
  ☆11Updated 10 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆11Updated 7 years ago
• dkoslicki / MinHashMetagenomics
  Fast approximation of similarity for sets of very different sizes
  ☆20Updated 3 years ago