Alternatives and similar repositories for PBWT-sec

Users that are interested in PBWT-sec are comparing it to the libraries listed below

• herumi / cybozulib
  a tiny library for C++
  ☆65Updated 3 weeks ago
• iwiwi / parallel-radix-sort
  An implementation of optimized parallel radix sort
  ☆49Updated 6 years ago
• Poyias / mBonsai
  Compact Tree Representation
  ☆16Updated 8 years ago
• herumi / opti
  ☆30Updated last year
• tudocomp / tudocomp
  TU DOrtmund lossless COMPression framework
  ☆19Updated 10 months ago
• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 3 years ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆66Updated 2 years ago
• kdm9 / hail
  Hail: extract lines from a file, a la `head -n x | tail -n y`
  ☆9Updated 4 years ago
• iwiwi / radix-heap
  An implementation of radix heap
  ☆62Updated 10 years ago
• herumi / misc
  ☆61Updated this week
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• xxsds / DYNAMIC
  Dynamic succinct/compressed data structures
  ☆112Updated last year
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆15Updated 7 years ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆27Updated 5 months ago
• pelotoncycle / bsort
  Extremely fast inplace radix sort
  ☆42Updated 5 years ago
• ot / emphf
  An efficient external-memory algorithm for the construction of minimal perfect hash functions
  ☆64Updated last year
• thm-mni-ii / sea
  Space efficient (graph) algorithms
  ☆18Updated 4 years ago
• turpinandrew / shuff
  Static Huffman coding
  ☆10Updated 8 years ago
• koeppl / stringsheet
  A cheatsheet for most common Stringology tasks
  ☆15Updated 4 years ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆10Updated 3 years ago
• fclaude / libcds2
  Compact Data Structures Library
  ☆100Updated 3 years ago
• noporpoise / jelly-hash
  Low memory multithreaded hash table
  ☆24Updated 10 years ago
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆88Updated last week
• tov / succinct-rs
  Succinct Data Structures for Rust
  ☆58Updated last month
• dominikkempa / fsais
  External memory suffix array construction using inducing
  ☆11Updated 4 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 5 years ago
• mpetri / FM-Index
  FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…
  ☆107Updated 10 years ago
• eriksjolund / diagonalsw
  C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)
  ☆23Updated 8 years ago
• GuillaumeHolley / BloomFilterTrie
  An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
  ☆44Updated 3 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago