gsneha26 / SegAlignLinks
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
☆70Updated last year
Alternatives and similar repositories for SegAlign
Users that are interested in SegAlign are comparing it to the libraries listed below
Sorting:
- A list of software for pangenomics☆128Updated 2 weeks ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- Show pangenome graphs in an easy way☆56Updated last month
- ☆118Updated last year
- ☆66Updated 2 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆55Updated last year
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Dfam Transposable Element Tools Docker container.☆100Updated this week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆81Updated 5 months ago
- Best practices and workflow for genome annotation☆78Updated 5 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆121Updated 2 weeks ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Scripting analyses of genomes in Ensembl Plants☆40Updated last week
- Simple pileup-based variant caller☆91Updated 4 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A program for detection of tRNA genes☆67Updated 2 years ago
- ☆71Updated 5 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated last year
- Assemblies from HPP Year 1 production☆76Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- PacBio BAM toolkit☆46Updated 6 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated 2 months ago