gsneha26 / SegAlignLinks
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
☆69Updated last year
Alternatives and similar repositories for SegAlign
Users that are interested in SegAlign are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- Simple pileup-based variant caller☆95Updated 9 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 2 weeks ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Show pangenome graphs in an easy way☆57Updated 5 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- ☆49Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- A local-haplotagging-based small and structural variant caller☆93Updated 2 weeks ago
- ☆52Updated 4 months ago
- PHAST☆80Updated last week
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- A list of software for pangenomics☆166Updated 3 weeks ago
- ☆68Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- ☆71Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 3 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last week
- ☆48Updated last month