gsneha26 / SegAlign
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
☆67Updated 5 months ago
Alternatives and similar repositories for SegAlign:
Users that are interested in SegAlign are comparing it to the libraries listed below
- ☆61Updated last week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Neural network classification of TE☆87Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated 11 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆94Updated 7 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- A list of software for pangenomics☆93Updated last week
- Scripting analyses of genomes in Ensembl Plants☆38Updated this week
- ☆46Updated 2 months ago
- Simple pileup-based variant caller☆85Updated 9 months ago
- ☆43Updated 8 years ago
- ☆74Updated 3 months ago
- ☆28Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆68Updated 10 months ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- Show pangenome graphs in an easy way☆54Updated 2 years ago
- perSVade: personalized Structural Variation detection☆38Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- Assemblies from HPP Year 1 production☆70Updated last year
- A program for assessing the T2T genome continuity☆62Updated last month
- NLR-Annotator upload☆62Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆50Updated last week