Illumina / PromoterAILinks
☆25Updated this week
Alternatives and similar repositories for PromoterAI
Users that are interested in PromoterAI are comparing it to the libraries listed below
Sorting:
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 4 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 6 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- Transcription Factor Enrichment Analysis☆34Updated last month
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- ☆15Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated this week
- ☆17Updated 7 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated 2 months ago
- ☆39Updated 8 months ago
- ☆25Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Associated code for EvoWeaver publication☆13Updated 2 weeks ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆26Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 2 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year