bowang-lab / OrthrusLinks
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
☆82Updated 2 months ago
Alternatives and similar repositories for Orthrus
Users that are interested in Orthrus are comparing it to the libraries listed below
Sorting:
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆125Updated 11 months ago
- Primary RNA sequence model☆39Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆41Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆48Updated last year
- Inference and numerics for multi-hybrid AI model architectures☆80Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- ☆93Updated last month
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆92Updated 4 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆104Updated 2 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- ☆17Updated 11 months ago
- ☆96Updated 4 months ago
- ☆73Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆30Updated 2 weeks ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆199Updated 2 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆45Updated 2 months ago
- ☆87Updated 2 months ago
- ☆42Updated 3 months ago
- ☆80Updated 2 years ago
- Predictor of TCR-epitope interactions☆34Updated last month
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆160Updated last week
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆94Updated last month
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆129Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago