bowang-lab / Orthrus
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
☆36Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for Orthrus
- Primary RNA sequence model☆29Updated 5 months ago
- Repository for mRNA Paper and CodonBERT publication.☆112Updated 5 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆49Updated 2 weeks ago
- Computational Optimization of DNA Activity (CODA)☆33Updated last month
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆20Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆96Updated last week
- Spectral Framework For AI Model Evaluation☆24Updated 3 weeks ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆33Updated 5 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 7 months ago
- ☆51Updated 2 months ago
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆21Updated 7 months ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 2 months ago
- ☆26Updated 5 months ago
- Biological prediction models made simple.☆33Updated this week
- Contrastive learning harmonizing protein language models and natural language models☆23Updated 5 months ago
- Diverse Genomic Embedding Benchmark☆37Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆23Updated this week
- ☆11Updated last year
- ☆66Updated last year
- RiboNucleic Acid (RNA) Language Model☆69Updated this week
- Evolutionary velocity with protein language models☆83Updated last year
- ☆14Updated 5 months ago
- Insights into the inner workings of transformer models for protein function prediction☆12Updated 9 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆60Updated 2 years ago
- Template-based protein design with Raygun☆43Updated last week
- ☆52Updated last month
- ☆73Updated this week
- Draw RNA secondary structures in python.☆43Updated 2 months ago
- Knowledge-primed neural networks☆34Updated last year