bowang-lab / OrthrusLinks
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
☆74Updated 2 weeks ago
Alternatives and similar repositories for Orthrus
Users that are interested in Orthrus are comparing it to the libraries listed below
Sorting:
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆122Updated 9 months ago
- Primary RNA sequence model☆38Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆87Updated 2 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆79Updated last week
- Inference and numerics for multi-hybrid AI model architectures☆73Updated last week
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- ☆15Updated 9 months ago
- ☆76Updated last year
- ☆92Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆144Updated last week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆344Updated this week
- ☆83Updated last week
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆85Updated last month
- ☆39Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated last week
- ☆29Updated this week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model☆276Updated 2 months ago
- RNA-seq prediction with deep convolutional neural networks.☆189Updated 2 months ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆116Updated last month
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ProCyon: A multimodal foundation model for protein phenotypes☆39Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- ☆67Updated 10 months ago
- ☆90Updated 10 months ago