Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
☆128Dec 10, 2025Updated 8 months ago
Alternatives and similar repositories for Orthrus
Users that are interested in Orthrus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of mRNA benchmarks☆53Aug 1, 2026Updated last week
- RiboNN: predicting translation efficiencies from mRNA sequences☆63Jan 12, 2026Updated 7 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 8 months ago
- ☆19Mar 21, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆63Aug 6, 2026Updated last week
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- ☆99Apr 3, 2026Updated 4 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆361Jun 12, 2026Updated 2 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆64Aug 2, 2024Updated 2 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 8 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆802Apr 22, 2025Updated last year
- ☆20Jun 11, 2026Updated 2 months ago
- ☆20Dec 5, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Foundation Models for Genomics & Transcriptomics☆907Feb 24, 2026Updated 5 months ago
- [NPJ AI] A foundation model for individual genome modelling☆28May 9, 2026Updated 3 months ago
- RNA-seq prediction with deep convolutional neural networks.☆259Aug 28, 2025Updated 11 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Pretraining infrastructure for multi-hybrid AI model architectures☆247Feb 20, 2026Updated 5 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆26Jun 26, 2024Updated 2 years ago
- ☆95May 29, 2025Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HydraRNA is a full-length RNA language model.☆18Dec 15, 2025Updated 7 months ago
- ☆19Mar 30, 2025Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆145May 19, 2026Updated 2 months ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- ☆158Nov 6, 2025Updated 9 months ago
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated 2 weeks ago
- Large language model Mistral for DNA☆24Sep 12, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Jun 5, 2025Updated last year
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 5 months ago
- ☆18Mar 31, 2026Updated 4 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated last month
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆318May 28, 2025Updated last year
- Genomic Pre-trained Network☆352Jul 25, 2026Updated 2 weeks ago
- ☆18Jan 2, 2025Updated last year