bowang-lab / OrthrusLinks
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
☆84Updated 3 months ago
Alternatives and similar repositories for Orthrus
Users that are interested in Orthrus are comparing it to the libraries listed below
Sorting:
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- Primary RNA sequence model☆40Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- Inference and numerics for multi-hybrid AI model architectures☆80Updated 2 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆105Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- ☆73Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 5 months ago
- ☆96Updated 2 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆49Updated last year
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆202Updated 2 months ago
- ☆91Updated last week
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆166Updated this week
- ☆30Updated last week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆42Updated 3 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆49Updated 2 months ago
- ☆17Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆95Updated last week
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆186Updated 3 months ago
- ☆14Updated 3 weeks ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 4 months ago
- ☆45Updated 2 years ago
- ☆84Updated 3 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆296Updated 2 weeks ago
- ☆96Updated 5 months ago