Alternatives and similar repositories for DNA-Diffusion

Users that are interested in DNA-Diffusion are comparing it to the libraries listed below

• HazyResearch / hyena-dna
  Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
  ☆735Updated 6 months ago
• lucidrains / enformer-pytorch
  Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
  ☆539Updated 4 months ago
• instadeepai / nucleotide-transformer
  Foundation Models for Genomics & Transcriptomics
  ☆734Updated 2 weeks ago
• google-deepmind / alphamissense
  ☆593Updated last year
• salesforce / progen
  Official release of the ProGen models
  ☆678Updated 2 years ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆556Updated last year
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆127Updated last year
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆652Updated 5 months ago
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆454Updated last week
• ElanaPearl / InterPLM
  Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders
  ☆262Updated 3 weeks ago
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆164Updated 3 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆299Updated 3 weeks ago
• Zymrael / savanna
  Pretraining infrastructure for multi-hybrid AI model architectures
  ☆192Updated 4 months ago
• bowang-lab / Orthrus
  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…
  ☆84Updated 3 months ago
• nadavbra / protein_bert
  ☆559Updated 7 months ago
• ramanathanlab / genslm
  GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
  ☆137Updated 2 weeks ago
• agemagician / Ankh
  Ankh: Optimized Protein Language Model
  ☆236Updated 5 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆367Updated last year
• Zymrael / vortex
  Inference and numerics for multi-hybrid AI model architectures
  ☆82Updated 3 months ago
• kuleshov-group / caduceus
  Bi-Directional Equivariant Long-Range DNA Sequence Modeling
  ☆212Updated 5 months ago
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆317Updated 5 months ago
• microsoft / protein-sequence-models
  ☆253Updated last year
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆306Updated last week
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆204Updated 2 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆503Updated 2 years ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆134Updated last year
• helicalAI / helical
  A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
  ☆166Updated this week
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆185Updated last year
• generatebio / chroma
  A generative model for programmable protein design
  ☆773Updated last year
• togethercomputer / stripedhyena
  Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
  ☆401Updated last year