pinellolab / DNA-DiffusionLinks
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
☆412Updated last month
Alternatives and similar repositories for DNA-Diffusion
Users that are interested in DNA-Diffusion are comparing it to the libraries listed below
Sorting:
- Foundation Models for Genomics & Transcriptomics☆706Updated 2 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆720Updated 5 months ago
- ☆590Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆531Updated 3 months ago
- Official release of the ProGen models☆673Updated 2 years ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆641Updated 4 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆554Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆272Updated this week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆409Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆125Updated 11 months ago
- Benchmarks for classification of genomic sequences☆158Updated last month
- Nature Methods: RNA foundation model (together with RhoFold)☆309Updated 4 months ago
- ☆555Updated 6 months ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆223Updated this week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated last month
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆137Updated last year
- Pretraining infrastructure for multi-hybrid AI model architectures☆188Updated 2 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆365Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆204Updated 3 months ago
- Ankh: Optimized Protein Language Model☆235Updated 3 months ago
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆156Updated last week
- ☆253Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆266Updated last year
- Official repository for the ProteinGym benchmarks☆352Updated 2 months ago
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆171Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- OmegaFold Release Code☆598Updated 2 years ago
- Genomic Pre-trained Network☆292Updated last week
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆257Updated 4 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆421Updated last month