pinellolab / DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
☆378Updated this week
Alternatives and similar repositories for DNA-Diffusion:
Users that are interested in DNA-Diffusion are comparing it to the libraries listed below
- 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics☆570Updated last week
- Official release of the ProGen models☆637Updated last year
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆637Updated 8 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆556Updated last week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆460Updated 4 months ago
- ☆544Updated 11 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆534Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆250Updated last year
- OmegaFold Release Code☆564Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆272Updated 3 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆104Updated 3 months ago
- Ankh: Optimized Protein Language Model☆219Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆243Updated 2 months ago
- A generative model for programmable protein design☆717Updated 10 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆245Updated this week
- Making Protein Design accessible to all via Google Colab!☆680Updated 2 months ago
- List of computational protein design research labs☆157Updated last week
- ☆237Updated 6 months ago
- Code for the ProteinMPNN paper☆1,158Updated 6 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆347Updated 8 months ago
- A collection of *fold* tools☆293Updated 5 months ago
- ☆521Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆306Updated last year
- Get protein embeddings from protein sequences☆476Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- Genomic Pre-trained Network☆238Updated this week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆301Updated 3 months ago
- ☆692Updated 6 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆334Updated 2 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆255Updated 2 months ago