🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
☆489Sep 15, 2026Updated this week
Alternatives and similar repositories for DNA-Diffusion
Users that are interested in DNA-Diffusion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆264Updated this week
- Foundation Models for Genomics & Transcriptomics☆920Feb 24, 2026Updated 6 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆808Apr 22, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆516Jan 1, 2026Updated 8 months ago
- ☆52Mar 22, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biological foundation modeling from molecular to genome scale☆1,569Mar 20, 2026Updated 6 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Updated this week
- Latent Diffusion Model for DNA Sequence Generation☆34Oct 30, 2024Updated last year
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆253Jun 9, 2026Updated 3 months ago
- ☆19Oct 21, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- ☆36Jan 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Biological sequence analysis for the modern age.☆311Updated this week
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆378Updated this week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆113Updated this week
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆185Mar 19, 2026Updated 6 months ago
- Implementation of Bit Diffusion, Hinton's group's attempt at discrete denoising diffusion, in Pytorch☆356Oct 14, 2023Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- ☆30May 15, 2023Updated 3 years ago
- ☆13Jan 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆779Jan 22, 2026Updated 7 months ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆61Jul 17, 2026Updated 2 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆475Jan 15, 2026Updated 8 months ago
- ChemNLP project☆178Sep 14, 2026Updated last week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆573Jun 26, 2026Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 3 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- diffusion model for protein sequence generation☆51Feb 18, 2023Updated 3 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆108Mar 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Sep 1, 2026Updated 2 weeks ago
- Listing of papers about machine learning for proteins.☆1,717May 31, 2024Updated 2 years ago
- Collection of mRNA benchmarks☆53Sep 5, 2026Updated 2 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆65Feb 12, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆66Updated this week