𧬠Generative modeling of regulatory DNA sequences with diffusion probabilistic models π¨
β490Jul 8, 2026Updated last week
Alternatives and similar repositories for DNA-Diffusion
Users that are interested in DNA-Diffusion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq prediction with deep convolutional neural networks.β254Aug 28, 2025Updated 10 months ago
- Foundation Models for Genomics & Transcriptomicsβ897Feb 24, 2026Updated 4 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyenaβ797Apr 22, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomeβ507Jan 1, 2026Updated 6 months ago
- β51Mar 22, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Biological foundation modeling from molecular to genome scaleβ1,528Mar 20, 2026Updated 4 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.β334Jun 12, 2026Updated last month
- Latent Diffusion Model for DNA Sequence Generationβ34Oct 30, 2024Updated last year
- Computational Optimization of DNA Activity (CODA)β69Apr 3, 2025Updated last year
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)β242Jun 9, 2026Updated last month
- β19Oct 21, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasksβ132Oct 31, 2024Updated last year
- Biological sequence analysis for the modern age.β304Updated this week
- β34Jan 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- β17May 22, 2025Updated last year
- Genomic Pre-trained Networkβ349Jun 5, 2026Updated last month
- Joint sequence and structure generation with RoseTTAFold sequence space diffusionβ333Oct 28, 2024Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.β107Jun 23, 2026Updated 3 weeks ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret themβ181Mar 19, 2026Updated 4 months ago
- Implementation of Bit Diffusion, Hinton's group's attempt at discrete denoising diffusion, in Pytorchβ357Oct 14, 2023Updated 2 years ago
- β30May 15, 2023Updated 3 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of β¦β40Mar 27, 2025Updated last year
- β13Jan 23, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genomeβ767Jan 22, 2026Updated 5 months ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.β57Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.β473Jan 15, 2026Updated 6 months ago
- ChemNLP projectβ176Jul 13, 2026Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.β52Oct 4, 2024Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorchβ572Jun 26, 2026Updated 3 weeks ago
- Evaluating genomic sequence models for explaining personalized expression variationβ20Dec 6, 2023Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiationβ106Mar 3, 2025Updated last year
- diffusion model for protein sequence generationβ50Feb 18, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarkingβ32Jun 29, 2026Updated 3 weeks ago
- Listing of papers about machine learning for proteins.β1,712May 31, 2024Updated 2 years ago
- Collection of mRNA benchmarksβ54Jun 9, 2026Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2β32Jan 22, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Cloudsβ188Apr 21, 2024Updated 2 years ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.β65Feb 12, 2025Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression dataβ309Jul 8, 2026Updated last week