🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
☆478Apr 23, 2026Updated this week
Alternatives and similar repositories for DNA-Diffusion
Users that are interested in DNA-Diffusion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆236Aug 28, 2025Updated 8 months ago
- Foundation Models for Genomics & Transcriptomics☆858Feb 24, 2026Updated 2 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆777Apr 22, 2025Updated last year
- ☆49Mar 22, 2026Updated last month
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆480Jan 1, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biological foundation modeling from molecular to genome scale☆1,505Mar 20, 2026Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated 2 weeks ago
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated last year
- Latent Diffusion Model for DNA Sequence Generation☆34Oct 30, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆219Feb 2, 2026Updated 2 months ago
- ☆34Jan 27, 2025Updated last year
- Biological sequence analysis for the modern age.☆274Updated this week
- ☆16May 22, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Oct 21, 2024Updated last year
- ☆13Jan 23, 2025Updated last year
- Genomic Pre-trained Network☆339Mar 25, 2026Updated last month
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆106Jan 31, 2026Updated 3 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆52Jan 19, 2026Updated 3 months ago
- Implementation of Bit Diffusion, Hinton's group's attempt at discrete denoising diffusion, in Pytorch☆356Oct 14, 2023Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- ☆30May 15, 2023Updated 2 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆179Mar 19, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆749Jan 22, 2026Updated 3 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆468Jan 15, 2026Updated 3 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Oct 4, 2024Updated last year
- ChemNLP project☆175Updated this week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆561Jul 7, 2025Updated 9 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- diffusion model for protein sequence generation☆50Feb 18, 2023Updated 3 years ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Apr 19, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Listing of papers about machine learning for proteins.☆1,701May 31, 2024Updated last year
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 24, 2026Updated 2 months ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆63Feb 12, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated 2 years ago
- a framework for training sequence-level deep learning networks☆399Dec 16, 2024Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆13Apr 23, 2025Updated last year