pinellolab / DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
☆366Updated this week
Related projects ⓘ
Alternatives and complementary repositories for DNA-Diffusion
- 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics☆472Updated last month
- Diffusion models of protein structure; trigonometry and attention are all you need!☆517Updated 10 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆516Updated last month
- RoseTTAFold2 protein/nucleic acid complex prediction☆332Updated 5 months ago
- Official release of the ProGen models☆618Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆240Updated 8 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆427Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆224Updated this week
- Making Protein Design accessible to all via Google Colab!☆615Updated last week
- Ankh: Optimized Protein Language Model☆210Updated 10 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆96Updated last week
- ☆510Updated 7 months ago
- Official repository for the ProteinGym benchmarks☆232Updated last week
- ☆228Updated 3 months ago
- A collection of *fold* tools☆288Updated last month
- RNA foundation model☆203Updated 7 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated last year
- Get protein embeddings from protein sequences☆463Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆263Updated last week
- ☆489Updated 10 months ago
- List of computational protein design research labs☆121Updated 3 weeks ago
- Benchmarks for classification of genomic sequences☆116Updated 8 months ago
- Implementation of ProteinBERT in Pytorch☆153Updated 3 years ago
- ☆642Updated 3 months ago
- A generative model for programmable protein design☆686Updated 6 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆137Updated 10 months ago
- Repository for mRNA Paper and CodonBERT publication.☆112Updated 4 months ago
- OmegaFold Release Code☆552Updated last year
- User friendly and accurate binder design pipeline☆268Updated this week
- Biological sequence analysis for the modern age.☆190Updated last week