instadeepai / nucleotide-transformerLinks
Foundation Models for Genomics & Transcriptomics
☆734Updated 2 weeks ago
Alternatives and similar repositories for nucleotide-transformer
Users that are interested in nucleotide-transformer are comparing it to the libraries listed below
Sorting:
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆435Updated 3 months ago
- ☆593Updated last year
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆717Updated 4 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆735Updated 7 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆539Updated 4 months ago
- Genomic Pre-trained Network☆306Updated last week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆299Updated 3 weeks ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆457Updated 6 months ago
- Benchmarks for classification of genomic sequences☆164Updated 3 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆421Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆204Updated 2 months ago
- ☆559Updated 7 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆317Updated 5 months ago
- Arc Virtual Cell Atlas☆448Updated 6 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆454Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,095Updated last week
- Get protein embeddings from protein sequences☆503Updated 2 years ago
- ☆1,374Updated last week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- Pretraining infrastructure for multi-hybrid AI model architectures☆192Updated 4 months ago
- Remote protein homology detection suite.☆598Updated 3 months ago
- Biological foundation modeling from molecular to genome scale☆1,441Updated 2 months ago
- ☆335Updated 6 months ago
- ☆369Updated 9 months ago
- ☆297Updated last year
- A comprehensive library for computational molecular biology☆886Updated this week
- An awesome repository of community-curated applications of ChatGPT and other LLMs in computational biology☆267Updated last year
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆580Updated this week
- This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.☆1,310Updated this week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆310Updated 9 months ago