instadeepai / nucleotide-transformerLinks
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
☆622Updated this week
Alternatives and similar repositories for nucleotide-transformer
Users that are interested in nucleotide-transformer are comparing it to the libraries listed below
Sorting:
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆382Updated 5 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆683Updated last month
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆494Updated 7 months ago
- Genomic Pre-trained Network☆268Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆263Updated this week
- ☆572Updated last year
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆667Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆435Updated 3 weeks ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆984Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆116Updated 7 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆392Updated last month
- Get protein embeddings from protein sequences☆493Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆277Updated last week
- Official repository for the ProteinGym benchmarks☆316Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆174Updated last year
- Benchmarks for classification of genomic sequences☆146Updated 2 months ago
- A comprehensive library for computational molecular biology☆809Updated 2 weeks ago
- Remote protein homology detection suite.☆569Updated 7 months ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆101Updated 4 months ago
- ☆530Updated 2 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆360Updated last year
- ☆261Updated last year
- Colab Notebooks covering deep learning tools for biomolecular structure prediction and design☆391Updated 2 months ago
- ColabFold on your local PC☆709Updated last month
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆197Updated this week
- Bilingual Language Model for Protein Sequence and Structure☆247Updated 5 months ago
- RNA-seq prediction with deep convolutional neural networks.☆152Updated 2 months ago
- Making Protein Design accessible to all via Google Colab!☆733Updated 3 weeks ago
- ☆315Updated 2 weeks ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆602Updated last week