instadeepai / nucleotide-transformerLinks
Foundation Models for Genomics & Transcriptomics
☆673Updated 3 weeks ago
Alternatives and similar repositories for nucleotide-transformer
Users that are interested in nucleotide-transformer are comparing it to the libraries listed below
Sorting:
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆403Updated 7 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆705Updated 3 months ago
- ☆581Updated last year
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆682Updated last month
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆512Updated last month
- Genomic Pre-trained Network☆273Updated 3 weeks ago
- Nature Methods: RNA foundation model (together with RhoFold)☆289Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated last month
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆408Updated 3 weeks ago
- Benchmarks for classification of genomic sequences☆150Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,018Updated last week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆443Updated 2 months ago
- ☆542Updated 4 months ago
- ☆1,295Updated last month
- Get protein embeddings from protein sequences☆495Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆185Updated last month
- Official release of the ProGen models☆660Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,398Updated 5 months ago
- Official repository for the ProteinGym benchmarks☆337Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- ☆276Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆625Updated 2 months ago
- Arc Virtual Cell Atlas☆386Updated 3 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆177Updated 3 weeks ago
- ☆348Updated 6 months ago
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆141Updated this week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆302Updated this week
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,236Updated 2 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆245Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆122Updated 9 months ago