AlphaFold 3 inference pipeline.
☆7,637Feb 20, 2026Updated last week
Alternatives and similar repositories for alphafold3
Users that are interested in alphafold3 are comparing it to the libraries listed below
Sorting:
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,668Updated this week
- Official repository for the Boltz biomolecular interaction models☆3,778Oct 3, 2025Updated 4 months ago
- ☆2,249Jan 26, 2026Updated last month
- Chai-1, SOTA model for biomolecular structure prediction☆1,885Dec 3, 2025Updated 2 months ago
- Open source code for AlphaFold 2.☆14,290Jan 15, 2026Updated last month
- Code for running RFdiffusion☆2,755Nov 20, 2025Updated 3 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,982Feb 7, 2024Updated 2 years ago
- ☆793May 27, 2025Updated 9 months ago
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆800Feb 9, 2026Updated 2 weeks ago
- Making Protein folding accessible to all!☆2,641Feb 11, 2026Updated 2 weeks ago
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,279Dec 16, 2025Updated 2 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,169Feb 21, 2026Updated last week
- Open source implementation of AlphaFold3☆1,037Oct 7, 2024Updated last year
- ☆543Feb 6, 2025Updated last year
- User friendly and accurate binder design pipeline☆1,017Feb 5, 2026Updated 3 weeks ago
- Public RFDiffusionAA repo☆464Jul 9, 2024Updated last year
- List of papers about Proteins Design using Deep Learning☆1,886Feb 21, 2026Updated last week
- Making Protein Design accessible to all via Google Colab!☆886Dec 8, 2025Updated 2 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆516Oct 21, 2025Updated 4 months ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆753Updated this week
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,440May 2, 2025Updated 9 months ago
- A generative model for programmable protein design☆798Apr 11, 2024Updated last year
- Biological foundation modeling from molecular to genome scale☆1,479Feb 16, 2026Updated last week
- Genome modeling and design across all domains of life☆3,336Updated this week
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆324Oct 6, 2025Updated 4 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,982Feb 21, 2026Updated last week
- This package contains deep learning models and related scripts for RoseTTAFold☆2,230Feb 15, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- ColabFold on your local PC☆829Updated this week
- Plausibility checks for generated molecule poses.☆355Feb 9, 2026Updated 2 weeks ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Jun 3, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆567Nov 19, 2025Updated 3 months ago
- ☆387Aug 7, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆663Jan 15, 2026Updated last month
- ☆209Apr 21, 2025Updated 10 months ago
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆665Updated this week
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆367Nov 7, 2025Updated 3 months ago