songlab-cal / gpnLinks
Genomic Pre-trained Network
☆318Updated this week
Alternatives and similar repositories for gpn
Users that are interested in gpn are comparing it to the libraries listed below
Sorting:
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆314Updated last week
- RNA-seq prediction with deep convolutional neural networks.☆220Updated 4 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆189Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆120Updated 3 weeks ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆448Updated 3 weeks ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆120Updated 3 weeks ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Updated 7 months ago
- Biological sequence analysis for the modern age.☆261Updated last month
- Benchmarks for classification of genomic sequences☆169Updated 5 months ago
- ☆24Updated 7 months ago
- ☆85Updated 2 years ago
- A deep learning-based tool to identify splice variants☆477Updated 6 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆128Updated last year
- Deep networks for protein functional inference☆182Updated last week
- ☆75Updated last year
- The ViennaRNA Package☆378Updated 3 weeks ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆462Updated 8 months ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆330Updated last week
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆218Updated 5 months ago
- Peptide-MHC I binding affinity prediction☆227Updated 7 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆170Updated 3 months ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆246Updated last week
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆265Updated 3 weeks ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆66Updated last year
- Protein 3D structure prediction pipeline☆95Updated last week
- Software for the visualization of sequence-function relationships☆207Updated 2 weeks ago
- A generative latent variable model for biological sequence families.☆246Updated 3 years ago
- An AI Agent for Fully Automated Multi-omic Analyses☆206Updated last year