songlab-cal / gpnLinks
Genomic Pre-trained Network
☆268Updated 2 months ago
Alternatives and similar repositories for gpn
Users that are interested in gpn are comparing it to the libraries listed below
Sorting:
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆263Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆174Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆152Updated 2 months ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆101Updated 3 months ago
- ☆74Updated last year
- Biological sequence analysis for the modern age.☆223Updated 3 weeks ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆382Updated 5 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆59Updated this week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆282Updated this week
- Deep networks for protein functional inference☆172Updated 2 months ago
- Benchmarks for classification of genomic sequences☆146Updated 2 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆184Updated 7 months ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆197Updated this week
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆244Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 3 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆154Updated 10 months ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆301Updated this week
- Automatically exported from code.google.com/p/cdhit☆676Updated 2 years ago
- A deep learning-based tool to identify splice variants☆440Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 4 months ago
- predicting expression effects of human genome variants ab initio from sequence☆127Updated 4 months ago
- Bilingual Language Model for Protein Sequence and Structure☆247Updated 5 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆267Updated 3 months ago
- Genome-scale protein function classification☆327Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆115Updated 7 months ago
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆207Updated last week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆435Updated 2 weeks ago
- ☆277Updated last week
- Protein 3D structure prediction pipeline☆80Updated this week