Genentech / gReLULinks
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
☆312Updated 3 weeks ago
Alternatives and similar repositories for gReLU
Users that are interested in gReLU are comparing it to the libraries listed below
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆216Updated 4 months ago
- Biological sequence analysis for the modern age.☆258Updated 2 weeks ago
- Genomic Pre-trained Network☆316Updated this week
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆217Updated 4 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Updated 6 months ago
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆182Updated last week
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆169Updated 2 months ago
- Benchmarks for classification of genomic sequences☆167Updated 4 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆111Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆89Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆187Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆461Updated 7 months ago
- ☆34Updated 11 months ago
- TF MOtif Discovery from Importance SCOres☆161Updated 2 weeks ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 9 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆234Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆65Updated 8 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 3 months ago
- Inference and numerics for multi-hybrid AI model architectures☆84Updated last week
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 11 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 3 years ago
- Arc Virtual Cell Atlas☆470Updated last week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆196Updated 3 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆202Updated last year
- Peptide-MHC I binding affinity prediction☆224Updated 7 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Tutorial on large language models for genomics☆266Updated 6 months ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆281Updated 10 months ago
- ☆149Updated last year