Genentech / gReLULinks
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
☆299Updated 2 weeks ago
Alternatives and similar repositories for gReLU
Users that are interested in gReLU are comparing it to the libraries listed below
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆202Updated 2 months ago
- Biological sequence analysis for the modern age.☆258Updated 3 weeks ago
- Genomic Pre-trained Network☆305Updated last week
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆217Updated 3 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆287Updated 5 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆106Updated 3 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆168Updated last month
- Benchmarks for classification of genomic sequences☆164Updated 3 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆185Updated last year
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆166Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆457Updated 6 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆233Updated last month
- ☆33Updated 9 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆82Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- Tutorial on large language models for genomics☆258Updated 5 months ago
- TF MOtif Discovery from Importance SCOres☆156Updated last week
- deep learning-inspired explainable sequence model for transcription initiation☆98Updated 8 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆121Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆219Updated 5 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆199Updated last year
- Arc Virtual Cell Atlas☆448Updated 6 months ago
- ☆42Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆153Updated this week
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 9 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year