Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
☆808Apr 22, 2025Updated last year
Alternatives and similar repositories for hyena-dna
Users that are interested in hyena-dna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Foundation Models for Genomics & Transcriptomics☆939Updated this week
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆519Jan 1, 2026Updated 10 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆253Mar 18, 2026Updated 7 months ago
- Benchmarks for classification of genomic sequences☆185Aug 14, 2025Updated last year
- Biological foundation modeling from molecular to genome scale☆1,587Mar 20, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆783Jan 22, 2026Updated 9 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated 2 years ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆441Mar 7, 2024Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆53Oct 4, 2024Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆269Sep 30, 2026Updated last month
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆235Updated this week
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆490Oct 28, 2026Updated last week
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆387Oct 30, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆367Oct 7, 2026Updated last month
- An annotated implementation of the Hyena Hierarchy paper☆34May 28, 2023Updated 3 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆133Dec 10, 2025Updated 10 months ago
- Genome modeling and design across all domains of life☆4,306Jun 19, 2026Updated 4 months ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆137Jan 1, 2026Updated 10 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,176Feb 7, 2024Updated 2 years ago
- ☆1,664Apr 29, 2026Updated 6 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆478Jan 15, 2026Updated 9 months ago
- ☆31Dec 15, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Convolutions for Sequence Modeling☆921Jun 13, 2024Updated 2 years ago
- Biological sequence analysis for the modern age.☆332Oct 20, 2026Updated 2 weeks ago
- ☆13Apr 23, 2025Updated last year
- This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.☆2,208Updated this week
- Pretraining infrastructure for multi-hybrid AI model architectures☆260Feb 20, 2026Updated 8 months ago
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆100Jun 10, 2026Updated 4 months ago
- ☆28Jun 5, 2025Updated last year
- ☆3,017Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆55Jul 2, 2023Updated 3 years ago
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 4 months ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆64Jul 17, 2026Updated 3 months ago
- ☆46Sep 13, 2023Updated 3 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆109Mar 3, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆68Sep 30, 2026Updated last month
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆159Oct 2, 2026Updated last month