HazyResearch / hyena-dnaLinks
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
☆712Updated 4 months ago
Alternatives and similar repositories for hyena-dna
Users that are interested in hyena-dna are comparing it to the libraries listed below
Sorting:
- Foundation Models for Genomics & Transcriptomics☆685Updated last month
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆390Updated last year
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆411Updated last week
- ☆585Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆411Updated 2 weeks ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆522Updated last month
- Official release of the ProGen models☆669Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,407Updated 6 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆181Updated last month
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆633Updated 3 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆203Updated 2 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆688Updated last month
- Benchmarks for classification of genomic sequences☆153Updated 2 weeks ago
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆792Updated this week
- ☆1,306Updated last month
- Genomic Pre-trained Network☆277Updated 3 weeks ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated this week
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,243Updated 3 months ago
- ☆545Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆123Updated 10 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,042Updated last week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆447Updated 3 months ago
- A trainable PyTorch reproduction of AlphaFold 3.☆1,283Updated last week
- Nature Methods: RNA foundation model (together with RhoFold)☆298Updated 3 months ago
- RNA-seq prediction with deep convolutional neural networks.☆189Updated this week
- ☆277Updated last year
- A generative model for programmable protein design☆757Updated last year
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆191Updated 7 months ago
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆134Updated last year
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆490Updated this week