Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
☆790Apr 22, 2025Updated last year
Alternatives and similar repositories for hyena-dna
Users that are interested in hyena-dna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Foundation Models for Genomics & Transcriptomics☆884Feb 24, 2026Updated 3 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆495Jan 1, 2026Updated 5 months ago
- Biological foundation modeling from molecular to genome scale☆1,520Mar 20, 2026Updated 2 months ago
- Benchmarks for classification of genomic sequences☆176Aug 14, 2025Updated 10 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆242Mar 18, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆759Jan 22, 2026Updated 4 months ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆432Mar 7, 2024Updated 2 years ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆566Jul 7, 2025Updated 11 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆125Dec 10, 2025Updated 6 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- An annotated implementation of the Hyena Hierarchy paper☆34May 28, 2023Updated 3 years ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆485Jun 3, 2026Updated 2 weeks ago
- Genomic Pre-trained Network☆344Jun 5, 2026Updated 2 weeks ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆329Jun 12, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- RNA-seq prediction with deep convolutional neural networks.☆245Aug 28, 2025Updated 9 months ago
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆228Updated this week
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆130Jan 1, 2026Updated 5 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆104Mar 3, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,126Feb 7, 2024Updated 2 years ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆54Jul 2, 2023Updated 2 years ago
- Convolutions for Sequence Modeling☆915Jun 13, 2024Updated 2 years ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆236Feb 20, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆1,584Apr 29, 2026Updated last month
- Sequential regulatory activity predictions with deep convolutional neural networks.☆473Jan 15, 2026Updated 5 months ago
- Genome modeling and design across all domains of life☆3,937Mar 20, 2026Updated 2 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆2,756Updated this week
- ☆13Apr 23, 2025Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆51Oct 4, 2024Updated last year
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- ☆46Sep 13, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Biological sequence analysis for the modern age.☆292Updated this week
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- ☆26Jun 5, 2025Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆181Mar 19, 2026Updated 3 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆107Jun 12, 2026Updated last week
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,382Dec 16, 2025Updated 6 months ago
- JAX/Flax implementation of the Hyena Hierarchy☆35Apr 27, 2023Updated 3 years ago