Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
☆806Apr 22, 2025Updated last year
Alternatives and similar repositories for hyena-dna
Users that are interested in hyena-dna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Foundation Models for Genomics & Transcriptomics☆917Feb 24, 2026Updated 6 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆513Jan 1, 2026Updated 8 months ago
- Biological foundation modeling from molecular to genome scale☆1,565Mar 20, 2026Updated 5 months ago
- Benchmarks for classification of genomic sequences☆182Aug 14, 2025Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆252Mar 18, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆778Jan 22, 2026Updated 7 months ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆438Mar 7, 2024Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆574Jun 26, 2026Updated 2 months ago
- An annotated implementation of the Hyena Hierarchy paper☆34May 28, 2023Updated 3 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆488Updated this week
- RNA-seq prediction with deep convolutional neural networks.☆262Aug 28, 2025Updated last year
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆354Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Jun 12, 2026Updated 2 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆130Dec 10, 2025Updated 8 months ago
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆231Aug 28, 2026Updated last week
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆134Jan 1, 2026Updated 8 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆250Feb 20, 2026Updated 6 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆107Mar 3, 2025Updated last year
- Genome modeling and design across all domains of life☆4,191Jun 19, 2026Updated 2 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆474Jan 15, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆54Jul 2, 2023Updated 3 years ago
- ☆1,622Apr 29, 2026Updated 4 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- Convolutions for Sequence Modeling☆918Jun 13, 2024Updated 2 years ago
- ☆29Dec 15, 2025Updated 8 months ago
- ☆13Apr 23, 2025Updated last year
- ☆2,940Updated this week
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆47Sep 13, 2023Updated 2 years ago
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆404May 28, 2026Updated 3 months ago
- This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.☆1,987Updated this week
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆19Jun 19, 2025Updated last year
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated last month
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year