HazyResearch / hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
☆646Updated 8 months ago
Alternatives and similar repositories for hyena-dna:
Users that are interested in hyena-dna are comparing it to the libraries listed below
- 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics☆576Updated last month
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆353Updated last year
- ☆550Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆344Updated 3 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆464Updated 5 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆382Updated last week
- Benchmarks for classification of genomic sequences☆134Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆564Updated last month
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆781Updated last month
- Official release of the ProGen models☆638Updated last year
- Genomic Pre-trained Network☆247Updated last week
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,179Updated last month
- Nature Methods: RNA foundation model (together with RhoFold)☆246Updated 3 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆176Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆251Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆108Updated 4 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆636Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆912Updated last week
- A trainable PyTorch reproduction of AlphaFold 3.☆978Updated this week
- Biological foundation modeling from molecular to genome scale☆1,336Updated 2 weeks ago
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆124Updated 6 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆536Updated last year
- Code for the ProteinMPNN paper☆1,185Updated 7 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆427Updated 9 months ago
- ☆522Updated last year
- DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆91Updated last month
- RoseTTAFold2 protein/nucleic acid complex prediction☆351Updated 9 months ago
- Making Protein Design accessible to all via Google Colab!☆695Updated 2 weeks ago
- ☆251Updated 11 months ago