goodarzilab / pypage
python implementation of the PAGE algorithm
☆17Updated 11 months ago
Alternatives and similar repositories for pypage:
Users that are interested in pypage are comparing it to the libraries listed below
- Blazing fast toolkit to work with .hic and .cool files☆30Updated this week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆11Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 3 months ago
- ☆17Updated 10 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 weeks ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 11 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆9Updated 2 weeks ago
- snakemake pipeline for Hi-C post-processing☆22Updated 9 months ago
- A toolkit for analyzing architectural stripes☆19Updated 4 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆14Updated this week
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- University of Cambridge PhD thesis☆15Updated 4 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆10Updated 11 months ago
- ☆16Updated last year
- High-definition modeling of chromatin + transcriptomics data☆23Updated this week
- ☆19Updated 4 months ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Explore the Hi-Cs☆11Updated 11 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- ☆12Updated 4 years ago
- a minimal, scriptable genome browser for python☆50Updated 4 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year