Alternatives and similar repositories for pypage:

Users that are interested in pypage are comparing it to the libraries listed below

• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆29Updated this week
• sims-lab / CapCruncher
  Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
  ☆9Updated last week
• pachterlab / qcbc
  ☆19Updated 5 months ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated 11 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 2 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 3 weeks ago
• lareaulab / psix
  ☆16Updated last year
• hart-lab / bagel
  BAGEL software
  ☆27Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆17Updated last year
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated last year
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 10 months ago
• songlab-cal / scquint
  ☆17Updated 11 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆25Updated 2 years ago
• nvictus / lavaburst
  Chromatin domains bursting with flavor
  ☆12Updated 5 years ago
• ChrisMaherLab / PACT
  ☆9Updated last year
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆26Updated 2 years ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 5 years ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated 2 weeks ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆26Updated 3 years ago
• genemine / iread
  iread
  ☆24Updated 3 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated 11 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆49Updated 8 months ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated last year