Alternatives and similar repositories for pypage

Users that are interested in pypage are comparing it to the libraries listed below

• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated this week
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆29Updated 6 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆41Updated this week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 6 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 9 months ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆18Updated 2 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• songlab-cal / scquint
  ☆18Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• ggdna / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated last year
• lareaulab / psix
  ☆16Updated last year
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 7 months ago
• gagneurlab / absplice
  ☆39Updated 3 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated this week
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• paulsengroup / hictkpy
  Python bindings for hictk: read and write .cool and .hic files directly from Python
  ☆16Updated this week
• kuanrongchan / STAGES
  ☆36Updated 8 months ago
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆30Updated 3 months ago
• matsengrp / phippery
  ☆19Updated 11 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆22Updated 2 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆36Updated 3 weeks ago
• paulsengroup / modle
  High-performance stochastic modeling of DNA loop extrusion interactions
  ☆17Updated last month