goodarzilab / pypage
python implementation of the PAGE algorithm
☆15Updated 8 months ago
Alternatives and similar repositories for pypage:
Users that are interested in pypage are comparing it to the libraries listed below
- Blazing fast toolkit to work with .hic and .cool files☆25Updated this week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆32Updated last month
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆25Updated 2 years ago
- ☆15Updated 7 months ago
- ☆14Updated 6 months ago
- ☆9Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆43Updated last year
- ☆33Updated 4 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 4 months ago
- A toolkit for analyzing architectural stripes☆19Updated last month
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆31Updated 2 years ago
- ☆19Updated last month
- Red-C data processing☆13Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆10Updated 8 months ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆9Updated 7 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- a minimal, scriptable genome browser for python☆48Updated 3 weeks ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- High-definition modeling of chromatin + transcriptomics data☆20Updated 2 months ago
- Kdrew's scripts for handling protein complex map data☆14Updated last year
- Perturb-seq analysis package☆14Updated 8 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated this week