goodarzilab / pypageLinks
python implementation of the PAGE algorithm
☆18Updated last year
Alternatives and similar repositories for pypage
Users that are interested in pypage are comparing it to the libraries listed below
Sorting:
- A Python package for gene network analysis☆32Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- A python package for showing JBrowse views☆26Updated 2 years ago
- a minimal, scriptable genome browser for python☆53Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆16Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆31Updated 6 months ago
- ☆40Updated 6 months ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- ☆18Updated last year
- Builds a PEP from SRA or GEO accessions☆54Updated last month
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Network Visualization using both GUI and Programming☆29Updated 7 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated this week
- splicing and feature maps for RBPs☆25Updated 3 years ago
- ☆10Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- ☆20Updated 7 months ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago