goodarzilab / pypageLinks
python implementation of the PAGE algorithm
☆17Updated last year
Alternatives and similar repositories for pypage
Users that are interested in pypage are comparing it to the libraries listed below
Sorting:
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- A python package for showing JBrowse views☆26Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆39Updated this week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- A Python package for gene network analysis☆32Updated 3 years ago
- a minimal, scriptable genome browser for python☆52Updated 9 months ago
- ☆16Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- ☆39Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆20Updated 4 months ago
- Paired Genomic Loci Tool Suite☆32Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- A fast dataloader for bigwig files made for machine learning☆28Updated 5 months ago
- ☆40Updated this week
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- simplified cellranger for long-read data☆19Updated last month
- Universal RObust Peak Annotator☆16Updated last year
- Red-C data processing☆15Updated 2 years ago
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- ☆40Updated 3 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- BAGEL software☆28Updated last year