kundajelab / idrLinks
IDR
☆31Updated 2 years ago
Alternatives and similar repositories for idr
Users that are interested in idr are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆30Updated 6 years ago
- Updated DANPOS2 to work with python3☆21Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Genomic Association Tester☆31Updated 2 years ago
- ☆58Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Demultiplexes a fastq.☆44Updated 4 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆37Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- RiboPlotR package for Ribo-plot☆15Updated last week