kundajelab / idr
IDR
☆31Updated last year
Alternatives and similar repositories for idr:
Users that are interested in idr are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Tutorial Website☆57Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- ☆40Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆30Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- ☆38Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 3 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- Genomic Association Tester☆30Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- RNA editing tests☆17Updated 4 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 11 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆34Updated 3 years ago