kundajelab / idrLinks
IDR
☆30Updated 2 years ago
Alternatives and similar repositories for idr
Users that are interested in idr are comparing it to the libraries listed below
Sorting:
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆90Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 3 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 11 months ago
- ☆47Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 8 months ago
- Tutorial Website☆61Updated 4 years ago
- Tools for working with BUS files☆102Updated 5 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago