kundajelab / idrLinks
IDR
☆31Updated 2 years ago
Alternatives and similar repositories for idr
Users that are interested in idr are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- Tutorial Website☆59Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 11 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- ☆39Updated last week
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ☆30Updated 6 years ago
- ☆44Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆69Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago