bio-ontology-research-group / DeepMOCCALinks
Graph Neural Network model for survival analysis from multi-omics data
☆13Updated 3 years ago
Alternatives and similar repositories for DeepMOCCA
Users that are interested in DeepMOCCA are comparing it to the libraries listed below
Sorting:
- ☆19Updated 4 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 5 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- Tutorials for multimodal omics data analysis☆16Updated 5 months ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- ☆19Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Python utilities for building integrated views of TCGA data.☆32Updated 7 years ago
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated 2 months ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- SUPREME: A GCN based approach for cancer subtype prediction☆18Updated last year
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆17Updated 5 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆23Updated 3 years ago
- NeST-VNN repo☆12Updated last month
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆49Updated 6 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Python API for Xena Hub☆53Updated 2 years ago