bio-ontology-research-group / DeepMOCCALinks
Graph Neural Network model for survival analysis from multi-omics data
☆14Updated 3 years ago
Alternatives and similar repositories for DeepMOCCA
Users that are interested in DeepMOCCA are comparing it to the libraries listed below
Sorting:
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Updated 4 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- ☆19Updated 5 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- Tutorials for multimodal omics data analysis☆18Updated 9 months ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Updated 6 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 5 years ago
- SUPREME: A GCN based approach for cancer subtype prediction☆18Updated 2 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Updated 3 years ago
- ☆19Updated 4 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 3 years ago
- ☆14Updated 5 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆57Updated 6 months ago
- Bootstrap imputation for scRNAseq data☆12Updated 5 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago