mims-harvard / SPECTRALinks
SPECTRA: Spectral framework for evaluation of biomedical AI models
☆40Updated 5 months ago
Alternatives and similar repositories for SPECTRA
Users that are interested in SPECTRA are comparing it to the libraries listed below
Sorting:
- ☆32Updated last week
- GraphPart, a data partitioning method for ML on biological sequences☆29Updated last year
- ☆40Updated 2 weeks ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆40Updated 2 years ago
- ☆45Updated last year
- a collection of colabs useful for molecular biology☆31Updated last year
- ProCyon: A multimodal foundation model for protein phenotypes☆39Updated last week
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆34Updated 2 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆26Updated 2 years ago
- Biological prediction models made simple.☆44Updated last week
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Arnie-based DegScore tool.☆26Updated 2 years ago
- Long disorder consensus predictor☆16Updated 5 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- Predict the structure of immune receptor proteins☆53Updated 9 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 6 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 11 months ago
- ☆24Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆46Updated 5 months ago
- ☆36Updated 7 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 8 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- ☆26Updated 8 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- ColabFold protocol☆52Updated 10 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago