Alternatives and similar repositories for af3cli

Users that are interested in af3cli are comparing it to the libraries listed below

• Jfeldman34 / AF3Complex
  ☆53Updated 6 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆88Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 6 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆65Updated 11 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆77Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆51Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆93Updated 3 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 3 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated 3 weeks ago
• lcbc-epfl / metal-site-prediction
  ☆43Updated 2 years ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 3 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆68Updated last month
• regeneron-mpds / propermab
  ☆43Updated 9 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆44Updated 7 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆70Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆81Updated 5 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆87Updated 7 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆116Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆55Updated 5 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆120Updated last week
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆56Updated last month
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆50Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• MinchaoFang / HalluDesign
  HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…
  ☆60Updated last week
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆96Updated last week