Alternatives and similar repositories for af3cli

Users that are interested in af3cli are comparing it to the libraries listed below

• Jfeldman34 / AF3Complex
  ☆42Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆65Updated last month
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆65Updated 9 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated 5 months ago
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated last week
• Kuhlman-Lab / evopro
  ☆86Updated last month
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated last month
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated last year
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆83Updated 4 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆70Updated 3 weeks ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆47Updated 6 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆31Updated last month
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 3 weeks ago
• regeneron-mpds / propermab
  ☆33Updated 4 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆33Updated 7 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆51Updated 2 weeks ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 4 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆56Updated 9 months ago
• wendao / CAGE-Prox
  Computer aided proximal decaging as a universal strategy for temporal protein activation
  ☆24Updated 3 months ago
• jkwang93 / AMP-Designer
  A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery
  ☆37Updated 2 weeks ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 2 months ago