Alternatives and similar repositories for af3cli

Users that are interested in af3cli are comparing it to the libraries listed below

• Jfeldman34 / AF3Complex
  ☆53Updated 7 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆93Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 7 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆67Updated 11 months ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆78Updated 3 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆26Updated 6 years ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆53Updated 3 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆72Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• Mingchenchen / PPIFlow
  de novo design of high affinity biological binders
  ☆122Updated this week
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆34Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆72Updated 5 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 4 months ago
• zeysun / AntiBMPNN
  Repo of AntiBMPNN project for antibody sequence design.
  ☆26Updated 8 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆119Updated 2 months ago
• lcbc-epfl / metal-site-prediction
  ☆43Updated 2 years ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆80Updated 2 months ago
• danny305 / StabilityOracle
  ☆30Updated 4 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆87Updated 4 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year
• regeneron-mpds / propermab
  ☆45Updated 10 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆106Updated last week
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• huifengzhao / RAPiDock
  ☆77Updated 3 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆38Updated 4 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆87Updated 8 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• bene837 / af2seq
  ☆47Updated last year