MAGPIE
☆17May 5, 2024Updated 2 years ago
Alternatives and similar repositories for MAGPIE
Users that are interested in MAGPIE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆51Jun 15, 2026Updated 2 months ago
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆19Sep 10, 2025Updated 11 months ago
- ☆19Aug 18, 2026Updated 2 weeks ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆46May 22, 2025Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An open-source platform for developing protein models beyond AlphaFold.☆11Jul 15, 2025Updated last year
- ☆11Mar 28, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆16Jan 21, 2026Updated 7 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 4 months ago
- ☆47Sep 16, 2024Updated last year
- Enzyme kinetics data extraction pipeline☆17Jul 17, 2026Updated last month
- ☆46Dec 30, 2025Updated 8 months ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆11Jun 25, 2024Updated 2 years ago
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Folding☆38Aug 16, 2026Updated 3 weeks ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated 3 months ago
- Python tool for combining steric maps and buried-volume figures with publication-ready molecular graphics rendering from xyzrender.☆32Jul 22, 2026Updated last month
- ☆46Jan 10, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/pyplif☆10Nov 23, 2018Updated 7 years ago
- Python package wrapping the DOCK Fortran program and providing several tools built on top of it.☆17Jan 16, 2026Updated 7 months ago
- Software for the prediction of FRET data from conformational ensembles.☆24Dec 19, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Template-based protein design with Raygun☆151Jul 30, 2026Updated last month
- Rifdock Library for Conformational Search☆177May 16, 2024Updated 2 years ago
- Plugin for folding sequences directly in PyMOL☆29Aug 5, 2025Updated last year
- ☆31Aug 8, 2025Updated last year
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆22Feb 25, 2026Updated 6 months ago
- ☆17Jun 3, 2025Updated last year
- ☆16Sep 29, 2025Updated 11 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆78Mar 27, 2025Updated last year
- A PyMOL plugin with accompanying Docker image for kinase inhibitor binding and affinity prediction☆12Jun 3, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Selection language for RDKit☆17Mar 20, 2026Updated 5 months ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated 2 years ago
- ☆128Jul 18, 2025Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- A tool for protein and protein complex structure prediction.☆29Jun 13, 2025Updated last year
- code and source data for de novo design of Kemp elimination paper☆26Sep 18, 2025Updated 11 months ago
- Longxing Cao's Contact Molecular Surface without pyrosetta☆15May 24, 2026Updated 3 months ago